Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2581

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2580: 10948 - SUPERFAMILY--SSF52266, at 490712 to 492348 10948 mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492942 to 494422 10949 mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494471 to 495097 10950 mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495200 to 499404 10951

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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492,042 + 10948 mRNA_2580 0.81 -0.7
492,146 - 10948 mRNA_2580 0.88 0.7
492,187 - 0.3
492,204 - -0.2
492,286 - -0.4
492,300 - 1.2
492,595 + -0.0
492,607 + 0.3
492,609 - -0.9
492,614 + -0.3
492,630 + 0.8
492,657 - -0.1
492,672 - 1.2
492,729 + 0.7
492,762 + 0.9
492,766 - 0.8
492,772 + -0.1
492,775 - 1.0
492,781 - 0.4
492,784 + -0.9
492,799 - -0.7
492,807 + 1.5
492,851 - -2.4
492,930 + -0.0
493,589 + 10949 mRNA_2581 0.44 -0.0
493,706 + 10949 mRNA_2581 0.52 -1.1
493,878 - 10949 mRNA_2581 0.63 1.7
494,054 - 10949 mRNA_2581 0.75 0.2
494,058 + 10949 mRNA_2581 0.75 -0.6
494,156 - 10949 mRNA_2581 0.82 0.7
494,190 + 10949 mRNA_2581 0.84 -0.6
494,199 + 10949 mRNA_2581 0.85 -0.4
494,201 + 10949 mRNA_2581 0.85 -1.7
494,232 + 10949 mRNA_2581 0.87 -0.0
494,321 - 0.3
494,326 - -0.6
494,479 - -1.6
494,633 + 10950 mRNA_2582 0.26 -0.2
494,638 - 10950 mRNA_2582 0.27 -0.8
494,651 - 10950 mRNA_2582 0.29 -1.0
494,654 + 10950 mRNA_2582 0.29 0.1
494,675 - 10950 mRNA_2582 0.33 -1.3
494,680 + 10950 mRNA_2582 0.33 -0.5
494,765 - 10950 mRNA_2582 0.47 -0.4
494,769 - 10950 mRNA_2582 0.48 -0.8
494,887 - 10950 mRNA_2582 0.66 -1.2
494,926 + 10950 mRNA_2582 0.73 -0.4
494,937 + 10950 mRNA_2582 0.74 -1.2
494,952 - 10950 mRNA_2582 0.77 -0.3
495,085 + -1.3
495,119 - -0.7
495,263 + -1.1
495,401 + -0.7