Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2569

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2568: 10936 - KOG2504 Monocarboxylate transporter, at 463556 to 465484 10936 mRNA_2569: 10937 - K07250 gabT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 466083 to 468142 10937 mRNA_2570: 10938 - SUPERFAMILY--SSF52266, at 468329 to 470280 10938

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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465,364 + 1.1
465,378 - 0.3
465,379 + -1.1
465,390 - -0.6
465,531 - -0.8
465,666 - 0.2
465,667 - 1.1
465,674 - 0.4
465,684 + 0.7
465,687 + -3.1
465,693 + 0.1
465,725 + 0.1
465,732 + -0.9
465,822 - 0.8
465,855 - -0.0
465,857 - -0.7
465,877 + -0.2
465,888 - -0.3
465,889 - -0.1
465,892 + 0.9
465,903 + -0.0
465,912 - 1.1
465,920 + -0.0
465,928 - 1.5
465,965 - 1.0
465,987 + -0.5
465,990 + 0.5
466,014 + -0.4
466,015 - 0.4
466,021 + 0.6
466,155 - -0.2
466,157 + -0.1
466,309 - 10937 mRNA_2569 0.11 1.4
466,500 + 10937 mRNA_2569 0.20 0.5
466,507 + 10937 mRNA_2569 0.21 1.6
466,775 + 10937 mRNA_2569 0.34 -0.6
467,033 - 10937 mRNA_2569 0.46 -0.6
467,047 - 10937 mRNA_2569 0.47 -0.1
467,184 + 10937 mRNA_2569 0.53 -1.2
467,248 + 10937 mRNA_2569 0.57 -0.2
467,620 - 10937 mRNA_2569 0.75 -0.3
467,871 + 10937 mRNA_2569 0.87 1.4
468,063 - -0.7
468,349 + 0.2
468,356 + -1.3
468,459 - 1.2
468,636 - 10938 mRNA_2570 0.16 -0.6
468,661 + 10938 mRNA_2570 0.17 -0.6
468,924 + 10938 mRNA_2570 0.30 -0.7