Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2559

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2558: 10926 - KOG3183 Predicted Zn-finger protein, at 439511 to 440693 10926 mRNA_2559: 10927 - HMMPfam-Translin family-PF01997,SUPERFAMILY--SSF74784, at 441201 to 442474 10927 mRNA_2560: 10928 - Hypothetical Protein, at 443128 to 444142 10928

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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440,370 - 10926 mRNA_2558 0.73 0.4
440,370 + 10926 mRNA_2558 0.73 -0.3
440,559 + 10926 mRNA_2558 0.89 -0.2
440,684 + 0.1
440,744 + 0.4
440,848 + 0.5
440,870 + 1.8
440,872 + -0.9
440,887 - -1.2
441,018 - 0.3
441,030 - -0.8
441,152 - -0.4
441,157 - -0.1
441,168 - -0.4
441,179 + -1.3
441,305 - 1.6
441,309 + 1.1
441,317 - 0.1
441,475 - 10927 mRNA_2559 0.22 -0.5
441,586 - 10927 mRNA_2559 0.30 0.9
441,587 - 10927 mRNA_2559 0.30 0.2
441,602 + 10927 mRNA_2559 0.31 0.3
441,905 + 10927 mRNA_2559 0.55 0.8
442,074 + 10927 mRNA_2559 0.69 -0.4
442,679 + 0.7
442,759 - -0.3
442,765 + -0.5
442,852 - 1.0
442,983 - -0.2
443,070 + 1.6
443,223 - 0.3
443,336 - 10928 mRNA_2560 0.20 -0.0
443,388 + 10928 mRNA_2560 0.26 0.1
443,414 - 10928 mRNA_2560 0.28 -0.8