Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2554

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2553: 10921 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 428822 to 431100 10921 mRNA_2554: 10922 - BLAST Amino acid/polyamine transporter I [Sporothrix insect..., at 431704 to 432671 10922 mRNA_2555: 10923 - K12736 PPWD1 peptidylprolyl isomerase domain and WD repeat-containing protein 1, at 432774 to 435316 10923

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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430,765 - 10921 mRNA_2553 0.85 1.4
430,814 - 10921 mRNA_2553 0.87 0.6
430,833 + 10921 mRNA_2553 0.88 1.0
430,918 - 0.4
431,305 - 0.1
431,314 + -0.5
431,333 + -0.9
431,338 - -0.4
431,613 - -1.9
431,777 - 1.6
432,238 + 10922 mRNA_2554 0.55 -0.1
432,322 + 10922 mRNA_2554 0.64 0.6
432,342 + 10922 mRNA_2554 0.66 0.7
432,351 - 10922 mRNA_2554 0.67 0.5
432,357 + 10922 mRNA_2554 0.67 0.4
432,403 - 10922 mRNA_2554 0.72 1.1
432,588 - 0.7