Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2553

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2552: 10920 - Hypothetical Protein, at 428082 to 428710 10920 mRNA_2553: 10921 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 428822 to 431100 10921 mRNA_2554: 10922 - BLAST Amino acid/polyamine transporter I [Sporothrix insect..., at 431704 to 432671 10922

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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428,026 + -1.3
428,040 + -0.2
428,086 + 0.2
428,105 - -0.1
428,121 - 2.8
428,237 - 10920 mRNA_2552 0.25 -0.2
428,265 + 10920 mRNA_2552 0.29 -1.7
428,265 - 10920 mRNA_2552 0.29 0.3
428,384 - 10920 mRNA_2552 0.48 -0.4
428,437 + 10920 mRNA_2552 0.56 0.6
428,553 + 10920 mRNA_2552 0.75 -0.9
428,567 + 10920 mRNA_2552 0.77 0.1
428,821 + 0.3
429,016 - 0.6
429,264 - 10921 mRNA_2553 0.19 0.3
429,270 - 10921 mRNA_2553 0.20 -0.6
429,319 - 10921 mRNA_2553 0.22 -1.1
429,520 - 10921 mRNA_2553 0.31 0.7
429,577 - 10921 mRNA_2553 0.33 2.5
429,824 - 10921 mRNA_2553 0.44 0.5
429,942 - 10921 mRNA_2553 0.49 1.1
429,979 + 10921 mRNA_2553 0.51 -0.8
429,985 + 10921 mRNA_2553 0.51 1.9
430,163 + 10921 mRNA_2553 0.59 -1.7
430,294 + 10921 mRNA_2553 0.65 -2.1
430,678 + 10921 mRNA_2553 0.81 -0.8
430,765 - 10921 mRNA_2553 0.85 1.4
430,814 - 10921 mRNA_2553 0.87 0.6
430,833 + 10921 mRNA_2553 0.88 1.0
430,918 - 0.4
431,305 - 0.1
431,314 + -0.5
431,333 + -0.9
431,338 - -0.4
431,613 - -1.9
431,777 - 1.6