Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2540

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2539: 10907 - Hypothetical Protein, at 396094 to 398437 10907 mRNA_2540: 10908 - SUPERFAMILY--SSF52058, at 398635 to 399613 10908 mRNA_2541: 10909 - HMMPfam-Hemerythrin HHE cation binding domain-PF01814, at 400071 to 401322 10909

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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397,658 + 10907 mRNA_2539 0.67 0.0
397,921 + 10907 mRNA_2539 0.78 -0.4
397,927 + 10907 mRNA_2539 0.78 -0.2
398,070 + 10907 mRNA_2539 0.84 -2.0
398,075 - 10907 mRNA_2539 0.85 -0.1
398,288 + -0.9
398,364 + -1.1
398,406 - -0.3
398,515 + 0.5
398,515 + -0.4
398,618 + 1.7
398,635 - -0.9
398,792 + 10908 mRNA_2540 0.16 -0.3
398,798 - 10908 mRNA_2540 0.17 -0.2
398,846 - 10908 mRNA_2540 0.22 -2.5
398,867 - 10908 mRNA_2540 0.24 0.9
398,908 - 10908 mRNA_2540 0.28 0.6
398,949 - 10908 mRNA_2540 0.32 -0.4
399,077 - 10908 mRNA_2540 0.45 -1.0
399,265 - 10908 mRNA_2540 0.64 0.3
399,380 - 10908 mRNA_2540 0.76 -0.2
399,434 + 10908 mRNA_2540 0.82 0.1
399,680 - -0.9
399,681 + -0.1
399,704 + -0.6
399,808 - 0.1
399,918 + -0.6
399,975 - -0.4
400,205 + 10909 mRNA_2541 0.11 -1.0
400,264 + 10909 mRNA_2541 0.15 -0.7