Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2516

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2515: 10883 - KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily), at 330969 to 334313 10883 mRNA_2516: 10884 - KOG0627 Heat shock transcription factor, at 334568 to 336151 10884

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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334,252 + 0.3
334,321 + 0.3
335,112 - 10884 mRNA_2516 0.34 0.6
335,337 - 10884 mRNA_2516 0.49 0.2
335,497 + 10884 mRNA_2516 0.59 -1.3
335,554 + 10884 mRNA_2516 0.62 0.1
335,822 + 10884 mRNA_2516 0.79 0.0
335,913 - 10884 mRNA_2516 0.85 -1.9
336,087 - -1.0
336,115 + 1.7
336,208 + -0.1
336,226 - -1.1
336,233 - -1.1
336,236 + 0.6
336,239 - 0.7
336,240 - 0.7
336,243 + -0.7
336,337 + -1.4
336,338 - 0.1
336,339 - -0.0
336,340 + 1.1
336,341 - 0.1
336,349 + 1.4
336,375 + -0.3
336,376 + -0.3
336,379 + -1.2
336,382 + -1.1
336,405 + 0.3
336,410 + -1.1
336,414 + -0.5
336,414 + -0.6
336,429 + 0.4
336,432 - -0.6
336,445 - 0.8
336,453 + -0.9
336,456 + -0.7
336,480 + -1.3
336,482 + -0.0
336,519 + -2.0
336,533 - -1.2
336,541 + 0.5
336,544 - 0.8
336,559 + -0.9
336,564 - -0.9
336,564 - -0.2
336,575 + -0.6
336,587 + -0.5
336,593 - 0.2
336,597 + -0.2
336,604 + 1.6
336,614 + 0.2
336,616 + -1.6
336,621 - -0.1
336,644 - -0.1
336,651 + 0.4
336,657 - 0.7
336,693 + -1.6
336,724 - -0.9
336,728 - -0.3
336,732 - -0.1
336,747 + 0.1
336,849 - 0.6
336,852 + -0.6
336,874 - -0.7
336,885 + 0.8
336,951 - 0.6
337,005 + -1.2
337,109 + -0.6
337,132 - -0.9