Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2453

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2452: 10820 - HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615, at 165209 to 166286 10820 mRNA_2453: 10821 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 166755 to 168701 10821 mRNA_2454: 10822 - K12823 DDX5, DBP2 ATP-dependent RNA helicase DDX5/DBP2, at 169687 to 172594 10822

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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165,847 - 10820 mRNA_2452 0.59 0.7
165,917 - 10820 mRNA_2452 0.66 1.1
166,296 - 0.6
166,605 - 1.4
167,048 + 10821 mRNA_2453 0.15 -0.3
167,311 - 10821 mRNA_2453 0.29 1.0
167,484 + 10821 mRNA_2453 0.37 -0.7
167,635 + 10821 mRNA_2453 0.45 -2.0
167,744 + 10821 mRNA_2453 0.51 -0.2
167,785 + 10821 mRNA_2453 0.53 -0.2
167,899 - 10821 mRNA_2453 0.59 -0.3
168,065 - 10821 mRNA_2453 0.67 1.1
168,367 - 10821 mRNA_2453 0.83 0.6
168,389 + 10821 mRNA_2453 0.84 0.2
168,524 + -0.0
168,613 - 0.3
168,634 - 2.2
168,649 - 0.2
168,659 - -1.3
168,737 + 0.5
168,756 - -0.9
168,778 - -1.8
168,790 + 2.0
168,792 + -0.9
168,794 + -0.3
168,797 + 0.5
168,797 + -0.4
168,802 - 0.6
168,804 + 0.9
168,808 - -0.1
168,818 + -0.1
168,819 - 0.4
168,821 - -1.8
168,822 + 0.3
168,824 + -0.1
168,824 + -0.1
168,840 + -0.3
168,846 + 0.5
168,861 - 0.2
168,883 - -0.6
168,912 - 0.1
168,921 + -0.3
168,925 - -0.6
168,944 + -0.4
168,949 + 0.7
168,953 + -0.0
168,953 - 0.3
168,965 - -1.5
168,965 + 0.7
168,967 + -0.3
168,973 - 0.2
169,002 - 0.6
169,006 - -1.0
169,009 - 0.1
169,010 - 0.2
169,012 + 1.4
169,013 - -0.6
169,019 + -0.8
169,023 - -0.9
169,025 - -0.2
169,025 - -0.0
169,026 + -1.5
169,027 - 1.6
169,034 + -0.4
169,036 - 1.3
169,041 - -0.8
169,041 - -1.8
169,046 + -0.9
169,048 - -0.6
169,048 - -0.3
169,050 - -0.7
169,053 + -1.1
169,053 + -0.1
169,057 - 0.0
169,059 + -0.1
169,089 - 1.9
169,090 - -0.5
169,097 - 1.2
169,101 + 2.0
169,101 + 2.6
169,102 + 0.0
169,103 + -2.1
169,105 + 0.4
169,106 + 0.1
169,107 + 1.7
169,107 - -0.5
169,108 + 0.5
169,110 - 0.3
169,119 - 1.3
169,124 + -0.5
169,138 + -0.8
169,155 - -0.4
169,172 - -0.9
169,178 + 0.1
169,179 - -1.2
169,184 - 1.8
169,185 + -1.2
169,198 + -0.4
169,211 - -0.2
169,291 - 0.4
169,300 + 1.0
169,450 + -0.7
169,683 + 1.6