Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2443

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140857 to 142808 10810 mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143347 to 145508 10811 mRNA_2444: 10812 - KOG4505 Na+/H+ antiporter, at 145860 to 150269 10812

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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142,425 - 10810 mRNA_2442 0.80 -0.4
142,500 + 10810 mRNA_2442 0.84 0.5
142,504 - 10810 mRNA_2442 0.84 -0.4
142,670 - 0.3
142,680 + -1.2
142,802 - -0.7
142,810 - -0.3
142,819 + 0.8
142,825 + 0.4
142,832 + -0.1
142,847 + -0.4
142,926 + -0.0
143,001 - -1.2
143,140 - -0.7
143,140 + -1.0
143,140 - -0.2
143,140 - 0.1
143,144 - 0.4
143,146 + -0.9
143,147 + -0.0
143,150 + -0.9
143,151 - -2.8
143,164 - -0.3
143,167 + -0.6
143,266 + 0.3
143,279 + -0.4
143,284 - -0.2
143,294 + -2.9
143,299 - 0.3
143,302 + -0.6
143,413 - 1.3
143,440 + -0.1
143,578 + 10811 mRNA_2443 0.11 -0.5
143,578 + 10811 mRNA_2443 0.11 -1.2
143,597 - 10811 mRNA_2443 0.12 -1.7
143,755 - 10811 mRNA_2443 0.19 -0.7
143,762 + 10811 mRNA_2443 0.19 -0.0
143,902 - 10811 mRNA_2443 0.26 -0.0
144,161 - 10811 mRNA_2443 0.38 -0.2
144,322 - 10811 mRNA_2443 0.45 -0.9
144,326 - 10811 mRNA_2443 0.45 0.4
144,622 - 10811 mRNA_2443 0.59 -1.5
145,043 - 10811 mRNA_2443 0.78 -0.5
145,046 + 10811 mRNA_2443 0.79 -1.8
145,602 - -0.9
145,618 - 0.8
145,621 - -2.0
145,623 + -1.2
145,625 - 1.3
145,625 + -0.8
145,637 - 0.4
145,639 - 0.7
145,643 - -0.2
145,652 + 0.4
145,658 - 0.5
145,669 - -2.8
145,671 - -0.5
145,678 + 2.1
145,704 + 0.4
145,792 + 0.4
145,800 - -0.6
145,821 + -0.3
145,949 + -0.0
146,110 + -1.7
146,252 - 0.4