Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2421

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2420: 10788 - KOG2618 Uncharacterized conserved protein, at 80430 to 82352 10788 mRNA_2421: 10789 - K11800 WDR22, BCRP2 WD repeat-containing protein 22, at 82479 to 84495 10789 mRNA_2422: 10790 - KOG2342 Uncharacterized conserved protein, at 84636 to 85865 10790

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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81,484 - 10788 mRNA_2420 0.55 0.4
81,764 + 10788 mRNA_2420 0.69 0.1
82,499 - -1.0
82,566 - 1.7
83,061 - 10789 mRNA_2421 0.29 0.1
83,246 + 10789 mRNA_2421 0.38 2.2
83,395 + 10789 mRNA_2421 0.45 0.3
83,542 - 10789 mRNA_2421 0.53 0.2
83,695 + 10789 mRNA_2421 0.60 -1.3
84,122 - 10789 mRNA_2421 0.81 -0.1
84,122 - 10789 mRNA_2421 0.81 0.1
84,129 + 10789 mRNA_2421 0.82 -0.3
84,129 + 10789 mRNA_2421 0.82 -0.7
84,375 - 0.7
84,376 - 1.0
84,835 + 10790 mRNA_2422 0.16 0.6
84,838 - 10790 mRNA_2422 0.16 -0.6
84,839 + 10790 mRNA_2422 0.17 1.5
84,848 - 10790 mRNA_2422 0.17 -0.2
84,872 - 10790 mRNA_2422 0.19 -1.1
84,894 - 10790 mRNA_2422 0.21 -0.5
85,177 - 10790 mRNA_2422 0.44 0.9
85,193 + 10790 mRNA_2422 0.45 0.2
85,195 - 10790 mRNA_2422 0.45 -1.8