Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2363

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2362: 10730 - HMMPfam-Pentatricopeptide repeat domain-PF13812, at 706631 to 709566 10730 mRNA_2363: 10731 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 709959 to 711160 10731 mRNA_2364: 10732 - K20471 COPD, ARCN1, RET2 coatomer subunit delta, at 712006 to 714085 10732

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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709,996 - -1.1
710,351 + 10731 mRNA_2363 0.33 -1.3
710,460 - 10731 mRNA_2363 0.42 0.6
710,617 - 10731 mRNA_2363 0.55 1.4
710,642 - 10731 mRNA_2363 0.57 -1.3
711,036 - 10731 mRNA_2363 0.90 0.5
711,042 + 0.5
711,465 - -2.3
711,507 - -0.2
711,509 - -1.0
711,677 + -0.4
711,718 + 0.5
711,722 - -1.3
711,722 + -0.2
711,729 - 0.2
711,743 + 0.6