Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2347

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2346: 10714 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 675723 to 677238 10714 mRNA_2347: 10715 - K09207 KLF6_7 krueppel-like factor 6/7, at 677617 to 679955 10715

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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676,724 - 10714 mRNA_2346 0.66 0.8
676,836 - 10714 mRNA_2346 0.73 1.5
676,851 + 10714 mRNA_2346 0.74 1.3
677,005 - 10714 mRNA_2346 0.85 2.7
677,034 - 10714 mRNA_2346 0.86 0.0
677,034 - 10714 mRNA_2346 0.86 1.7
677,312 - 0.1
677,322 - 0.6
677,333 + 2.6
677,341 + -0.2
677,365 + -1.5
677,485 - 0.9
677,499 - 1.9
677,655 - 0.5
677,830 + -0.6
678,398 - 10715 mRNA_2347 0.33 -0.1
678,658 + 10715 mRNA_2347 0.45 1.3
678,786 - 10715 mRNA_2347 0.50 -0.4
679,059 - 10715 mRNA_2347 0.62 0.5
679,105 - 10715 mRNA_2347 0.64 -0.0
679,406 - 10715 mRNA_2347 0.76 -0.8
679,407 + 10715 mRNA_2347 0.77 1.6
679,681 + 10715 mRNA_2347 0.88 0.5
679,685 - 10715 mRNA_2347 0.88 -1.2
679,808 + 0.0
679,822 + 1.4
680,010 + 0.5
680,088 - 0.1
680,089 + -0.2
680,138 + 1.7
680,229 - 0.1
680,247 + 0.5
680,258 + 0.2
680,278 + 0.2
680,286 - -0.9
680,286 - 0.2
680,288 - -0.1
680,290 - 1.0
680,290 - 0.6
680,309 - 0.4
680,372 + 0.7
680,398 + 1.2
680,408 + 0.3
680,411 - -1.4
680,416 + 0.6
680,428 - 0.2
680,435 - -1.5
680,452 - 0.4
680,453 + -1.0
680,465 + -0.4
680,476 - -0.6
680,485 + -0.3
680,487 + -1.7
680,487 + 1.5
680,489 - 1.8
680,551 - 0.0
680,552 + -0.6
680,553 + 0.3
680,553 + 0.2
680,554 - -0.6
680,559 + 0.5
680,560 + 0.3
680,562 + 2.3
680,571 + -0.8
680,572 + -0.6
680,572 + 0.7
680,572 - -0.0
680,577 - -0.6
680,583 + -0.6
680,584 - 0.4
680,625 - -0.3
680,633 + -0.0
680,636 + -0.3
680,637 - -0.3
680,644 + -0.1
680,648 + 0.2
680,653 + -2.7
680,683 - 0.3
680,686 - -1.6
680,690 - -0.1
680,694 - -2.6
680,696 + 0.6
680,699 - -0.4
680,703 - 0.4
680,706 - 0.3
680,708 + -0.3
680,719 + 1.9
680,738 + -0.6
680,740 - 0.9
680,747 - -0.3
680,758 + -0.7
680,776 + -0.7
680,776 + -0.1
680,778 + 0.1
680,786 - -0.3
680,807 + -0.3
680,822 + -0.9
680,862 + 0.6
680,863 - -1.4
680,866 + -1.1
680,875 + 1.4
680,880 - 0.9
680,888 + 0.4
680,888 - -0.8
680,907 - 0.5
680,917 - -0.3
680,919 - 0.3
680,923 + -0.1
680,927 + -0.9
680,941 + 0.1
680,942 - -0.8
680,944 + 0.6
680,951 + 0.8
680,955 + 0.5