Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2338

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2337: 10705 - BLAST general substrate transporter [Wallemia mellicola..., at 656119 to 656520 10705 mRNA_2338: 10706 - K05545 DUS4 tRNA-dihydrouridine synthase 4, at 657491 to 659083 10706 mRNA_2339: 10707 - SUPERFAMILY--SSF55298, at 659249 to 660620 10707

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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656,589 + 1.7
656,589 - -0.6
656,591 - 0.3
656,606 + 0.6
656,612 + -1.3
656,626 + 0.4
656,629 - -0.2
656,629 + -0.4
656,637 - -0.4
656,663 + 0.6
656,672 + 1.7
656,672 - 0.8
656,679 - -0.1
656,682 + -0.7
656,688 + -0.4
656,724 + -0.4
656,742 + 0.2
656,755 - -1.1
656,778 - 0.8
656,791 - -0.2
656,816 - 1.0
656,816 - 0.4
656,832 + -1.5
656,856 - -0.1
656,890 - 0.7
656,899 - 0.4
656,901 - 0.7
656,921 - 0.6
656,923 - -0.3
656,923 - 0.6
656,925 - -0.1
656,930 - -0.4
656,945 + -0.9
656,960 + 0.5
656,960 - -1.1
656,961 + 0.1
656,978 + -0.2
656,978 - -0.8
656,980 - 0.1
656,987 - 0.3
656,990 + -0.3
656,992 - 0.2
656,997 - 0.2
657,029 - 2.0
657,039 + 2.5
657,067 - 0.4
657,077 + 0.1
657,085 + 1.0
657,088 - -0.5
657,123 - 1.3
657,132 + -0.2
657,157 + 1.3
657,164 + -0.2
657,165 - -1.5
657,174 - -1.7
657,175 + -0.3
657,183 + -0.5
657,191 - -2.4
657,204 + -0.1
657,216 - 0.5
657,227 + 0.1
657,234 - 0.4
657,243 - 0.6
657,244 - -0.6
657,246 - 1.5
657,257 + 0.3
657,260 - 2.6
657,265 + -0.4
657,270 - 0.1
657,284 + 0.4
657,292 + 1.6
657,292 + 1.5
657,299 + 1.1
657,308 + -0.4
657,318 + 0.5
657,324 + 0.0
657,325 - 0.8
657,335 + -0.1
657,335 - 0.9
657,421 - 0.3
657,438 - 0.3
657,451 - -0.1
657,463 + 1.0
657,463 + -0.4
657,467 + 0.4
657,584 - -0.9
657,590 - -2.0
657,637 + 0.0
657,641 - 1.5
657,733 - 10706 mRNA_2338 0.15 -0.5
657,789 - 10706 mRNA_2338 0.19 0.1
659,217 - -0.4
659,711 + 10707 mRNA_2339 0.34 0.7