Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2277

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2276: 10644 - K02954 RP-S14, MRPS14, rpsN small subunit ribosomal protein S14, at 501721 to 502247 10644 mRNA_2277: 10645 - K13717 OTUD3 OTU domain-containing protein 3, at 502464 to 504545 10645 mRNA_2278: 10646 - KOG1118 Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation, at 504709 to 506668 10646

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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502,297 - 1.7
502,300 + 0.3
502,301 + 1.3
502,310 + -1.0
502,311 - -3.2
502,416 + -1.6
502,422 + -0.9
502,437 - 0.4
502,438 - 0.5
502,441 + -0.9
502,443 + -1.2
502,445 + 0.7
502,446 - 1.4
502,446 - 0.1
502,497 - 0.5
502,593 - -1.2
502,610 - -1.1
502,612 - -0.1
502,612 - 2.5
502,625 + 0.7
502,713 - 10645 mRNA_2277 0.12 1.0
502,731 - 10645 mRNA_2277 0.13 -0.4
502,737 + 10645 mRNA_2277 0.13 0.7
502,743 + 10645 mRNA_2277 0.13 0.2
502,850 + 10645 mRNA_2277 0.19 -0.4
503,364 + 10645 mRNA_2277 0.43 0.4
503,378 + 10645 mRNA_2277 0.44 1.2
503,491 + 10645 mRNA_2277 0.49 0.3
503,623 + 10645 mRNA_2277 0.56 -0.1
503,798 + 10645 mRNA_2277 0.64 -1.5
504,244 - 10645 mRNA_2277 0.85 -0.2
504,535 - -0.1
504,809 - -1.4
504,920 + 10646 mRNA_2278 0.11 -0.1
505,202 - 10646 mRNA_2278 0.25 -0.3
505,524 + 10646 mRNA_2278 0.42 1.0