Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2275

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2274: 10642 - KOG2352 Predicted spermine/spermidine synthase, at 499245 to 500264 10642 mRNA_2275: 10643 - HMMPfam-MAPEG family-PF01124,SUPERFAMILY--SSF161084, at 500597 to 501422 10643 mRNA_2276: 10644 - K02954 RP-S14, MRPS14, rpsN small subunit ribosomal protein S14, at 501721 to 502247 10644

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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499,608 - 10642 mRNA_2274 0.36 0.7
499,615 + 10642 mRNA_2274 0.36 0.7
499,625 - 10642 mRNA_2274 0.37 0.5
499,912 + 10642 mRNA_2274 0.65 -0.4
500,061 - 10642 mRNA_2274 0.80 1.0
500,071 - 10642 mRNA_2274 0.81 1.1
500,248 + 0.4
500,361 - -0.1
500,397 + -1.0
500,398 + 0.4
500,401 + -0.1
500,434 + 0.3
500,522 - -0.9
500,532 + 1.5
500,537 + -0.1
500,540 + 0.8
500,556 - 0.2
500,663 + -0.8
500,668 + 0.1
500,688 - 10643 mRNA_2275 0.11 1.2
500,835 - 10643 mRNA_2275 0.29 -1.5
500,986 - 10643 mRNA_2275 0.47 0.2
501,124 + 10643 mRNA_2275 0.64 0.2
501,377 + 1.0
502,297 - 1.7
502,300 + 0.3
502,301 + 1.3
502,310 + -1.0
502,311 - -3.2
502,416 + -1.6
502,422 + -0.9