Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2244

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2243: 10611 - SUPERFAMILY--SSF52266, at 450168 to 452098 10611 mRNA_2244: 10612 - KOG4120 G/T mismatch-specific thymine DNA glycosylase, at 452902 to 454246 10612 mRNA_2245: 10613 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 455190 to 456884 10613

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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452,007 - -0.4
452,021 - 0.1
452,036 + -1.5
452,182 - -0.4
452,193 + 0.3
452,201 + -0.2
452,214 + -0.1
452,217 + 0.1
452,220 + 0.3
452,222 + -0.3
452,226 - -1.0
452,231 + 2.2
452,241 + 0.9
452,245 + -1.7
452,264 - 1.0
452,283 - 1.8
452,286 + 0.4
452,288 + -0.6
452,294 - -0.3
452,295 + -0.4
452,298 - 1.2
452,313 - 1.1
452,339 + 1.3
452,350 - 0.7
452,359 + -0.2
452,362 + 0.5
452,372 - 1.0
452,385 - -1.4
452,388 - 0.2
452,400 + 0.9
452,409 + -0.8
452,410 - 0.1
452,415 - -0.1
452,432 - -0.6
452,441 - -0.3
452,443 + -0.8
452,445 + 0.0
452,453 - 0.2
452,458 - -0.4
452,458 - -0.3
452,460 - -0.1
452,461 - 0.9
452,475 + 1.9
452,480 + 0.7
452,480 + 0.3
452,488 - 1.1
452,490 - 0.2
452,490 - 1.2
452,495 + 0.5
452,499 + 0.4
452,499 + -0.6
452,500 + 0.1
452,503 - 0.0
452,506 - -0.1
452,506 - 0.1
452,522 - -0.8
452,522 - 1.2
452,522 - 0.5
452,540 - -0.8
452,559 + 0.5
452,578 + 0.0
452,605 + -2.8
452,623 - 0.8
452,631 + -0.5
452,631 - 0.2
452,635 + 1.2
452,649 + -0.7
452,666 - -1.0
452,773 - -1.5
452,782 + -1.3
452,798 + 1.9
452,811 + 0.5
452,917 - -1.4
452,928 + 0.8
453,205 - 10612 mRNA_2244 0.23 0.5
453,220 + 10612 mRNA_2244 0.24 1.8
453,643 - 10612 mRNA_2244 0.55 1.4
454,227 - 1.2
454,238 - 0.2
454,238 - -0.8
454,356 - 0.2
454,399 + -0.2
454,501 - 1.5
454,509 + 0.2
454,787 - 1.3
454,787 - 0.3
454,798 + 0.1
454,804 - -3.3
454,812 + 0.3
454,814 - -1.7
454,814 - 0.3
454,838 - 0.1
454,838 - 0.9
454,838 - -0.2
454,846 + 0.2
454,852 - -0.1
454,873 + -0.7
454,874 - 0.8
454,876 + 0.0
454,877 + 0.3
454,879 + 0.2
454,916 - 0.3
454,932 - -3.2
454,933 + -1.0
454,933 + 0.0
454,937 + 0.1
454,937 + -0.1
454,939 + 0.1
454,939 - -1.6
454,939 - -1.9
454,939 + -0.3
454,940 - -0.4
454,947 + -1.1
454,948 + 1.0
454,949 + -0.0
454,950 + 0.8
454,951 - 0.1
454,958 - 1.9
454,969 + 0.2
454,973 + 1.0
454,984 - 0.3
454,984 - 0.3
455,081 - 0.4
455,086 + 0.9
455,088 - -0.2
455,104 - 0.8
455,104 - -0.5
455,104 - 0.3
455,106 - -0.8
455,116 - -0.7
455,122 + -1.5
455,123 + -0.4
455,123 - 1.1
455,123 + 0.3
455,124 + 0.8