Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2224

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2223: 10591 - Hypothetical Protein, at 398551 to 400277 10591 mRNA_2224: 10592 - KOG2653 6-phosphogluconate dehydrogenase, at 400569 to 403367 10592 mRNA_2225: 10593 - Hypothetical Protein, at 403974 to 404899 10593

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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399,666 - 10591 mRNA_2223 0.65 -1.3
399,668 + 10591 mRNA_2223 0.65 1.3
399,677 + 10591 mRNA_2223 0.65 -0.6
399,709 - 10591 mRNA_2223 0.67 0.3
399,818 - 10591 mRNA_2223 0.73 1.3
399,946 - 10591 mRNA_2223 0.81 -0.1
400,269 - 1.0
400,418 + -0.4
400,568 + 1.1
400,741 - -0.6
400,819 + -0.6
400,863 + 10592 mRNA_2224 0.11 -1.3
400,958 - 10592 mRNA_2224 0.14 -0.7
400,973 + 10592 mRNA_2224 0.14 -2.3
400,986 + 10592 mRNA_2224 0.15 -1.6
401,003 - 10592 mRNA_2224 0.16 -1.2
401,125 - 10592 mRNA_2224 0.20 -1.1
401,137 + 10592 mRNA_2224 0.20 -1.1
401,141 - 10592 mRNA_2224 0.20 -1.2
401,141 - 10592 mRNA_2224 0.20 -1.6
401,209 - 10592 mRNA_2224 0.23 -2.5
401,289 + 10592 mRNA_2224 0.26 0.2
401,290 + 10592 mRNA_2224 0.26 2.6
401,293 + 10592 mRNA_2224 0.26 0.7
401,303 + 10592 mRNA_2224 0.26 0.1
401,437 - 10592 mRNA_2224 0.31 -1.4
401,464 - 10592 mRNA_2224 0.32 1.1
401,587 - 10592 mRNA_2224 0.36 0.1
401,612 + 10592 mRNA_2224 0.37 0.1
401,884 + 10592 mRNA_2224 0.47 0.6
402,216 + 10592 mRNA_2224 0.59 0.0
402,425 + 10592 mRNA_2224 0.66 1.2
402,591 + 10592 mRNA_2224 0.72 1.4
402,855 - 10592 mRNA_2224 0.82 0.1
403,168 + -0.1
403,550 - -0.8
403,574 - 0.3
403,613 - 0.3
403,709 + -0.9
403,735 + 0.0
403,736 + 0.7
403,740 + -1.0
403,743 - -1.7
403,746 + 2.0
403,753 + 0.8
403,780 - -0.3
403,843 - -0.4
403,870 + 0.0
403,870 - 0.6
403,873 - 0.3
403,876 - 0.4
403,880 - 0.1
403,900 + -0.0
403,906 + -0.3
403,908 + 1.5
403,909 + 0.9
403,911 + 0.9
403,920 - -1.9
403,922 - 0.0
403,925 + 0.6
404,054 + -0.6
404,075 - 10593 mRNA_2225 0.11 -0.6
404,088 + 10593 mRNA_2225 0.12 -0.1
404,093 + 10593 mRNA_2225 0.13 0.3
404,197 - 10593 mRNA_2225 0.24 -1.4
404,221 + 10593 mRNA_2225 0.27 -0.6
404,223 - 10593 mRNA_2225 0.27 -1.8
404,223 - 10593 mRNA_2225 0.27 -0.2
404,339 - 10593 mRNA_2225 0.39 0.8