Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2184

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2183: 10551 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 284423 to 286019 10551 mRNA_2184: 10552 - Hypothetical Protein, at 286236 to 287917 10552 mRNA_2185: 10553 - HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879, at 288686 to 288844 10553

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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285,280 + 10551 mRNA_2183 0.54 -0.6
285,570 - 10551 mRNA_2183 0.72 -0.0
285,619 - 10551 mRNA_2183 0.75 0.2
285,688 - 10551 mRNA_2183 0.79 1.3
285,833 + 10551 mRNA_2183 0.88 2.4
285,853 - 10551 mRNA_2183 0.90 -1.1
286,012 + 0.2
286,124 - -0.3
286,134 - 1.7
286,135 - 0.1
286,171 - -0.1
286,189 - -0.6
286,206 - 0.8
286,249 + -0.2
286,272 + 1.2
286,373 - -1.0
286,405 + 10552 mRNA_2184 0.10 -0.9
286,697 + 10552 mRNA_2184 0.27 -0.4
286,724 - 10552 mRNA_2184 0.29 2.2
287,027 + 10552 mRNA_2184 0.47 1.4
287,331 - 10552 mRNA_2184 0.65 -0.7
287,331 + 10552 mRNA_2184 0.65 0.3
287,594 - 10552 mRNA_2184 0.81 0.3
288,160 - 0.7
288,421 + -0.1
288,477 - 0.5
288,484 + -0.4
288,546 + -0.5
288,557 - -0.4
288,561 - 0.6
288,568 + 0.0
288,591 + 0.2
288,622 + -0.3
288,626 - 0.1
288,632 + 1.1
288,640 + -0.2
288,652 + -0.3
288,669 + -0.6
288,716 - 10553 mRNA_2185 0.19 -3.0
288,717 - 10553 mRNA_2185 0.19 1.0
288,733 + 10553 mRNA_2185 0.30 -0.5
288,784 - 10553 mRNA_2185 0.62 0.1
288,883 - -0.3
288,891 + -0.7