Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2139

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2138: 10506 - HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281, at 157835 to 161101 10506 mRNA_2139: 10507 - K09377 CSRP cysteine and glycine-rich protein, at 161377 to 162483 10507 mRNA_2140: 10508 - HMMPfam-F-box domain-PF00646,HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF48350,SUPERFAMILY--SSF81383, at 162925 to 174925 10508

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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160,406 + 10506 mRNA_2138 0.79 -1.4
160,626 - 10506 mRNA_2138 0.85 0.0
160,658 - 10506 mRNA_2138 0.86 -0.1
160,813 + -0.7
160,851 - 1.2
160,918 + 1.7
161,077 + 0.2
161,109 + -0.8
161,200 - 0.5
161,263 + 0.8
161,273 + 0.3
161,275 - -0.0
161,490 - 10507 mRNA_2139 0.10 -0.4
161,638 + 10507 mRNA_2139 0.24 0.2
161,736 + 10507 mRNA_2139 0.32 0.1
161,795 - 10507 mRNA_2139 0.38 -1.4
162,252 - 10507 mRNA_2139 0.79 0.4
162,338 - 10507 mRNA_2139 0.87 -0.3
162,894 - -1.6
163,472 + 1.0