Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2110

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2109: 10477 - SUPERFAMILY--SSF56112, at 98028 to 98739 10477 mRNA_2110: 10478 - K10277 KDM8, JMJD5 lysine-specific demethylase 8, at 99075 to 100834 10478 mRNA_2111: 10479 - K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1, at 101300 to 102530 10479

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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98,142 - 10477 mRNA_2109 0.16 0.1
98,475 - 10477 mRNA_2109 0.63 0.4
98,479 - 10477 mRNA_2109 0.63 -2.0
98,479 + 10477 mRNA_2109 0.63 0.2
98,485 + 10477 mRNA_2109 0.64 1.0
98,617 - 10477 mRNA_2109 0.83 -0.6
98,741 - 1.6
98,814 - -0.4
98,897 - -0.0
98,908 - 0.1
98,911 + 0.5
98,913 + 0.1
99,019 + 0.4
99,023 + -0.1
99,079 - 0.2
99,208 - -0.7
99,231 - 0.7
99,346 - 10478 mRNA_2110 0.15 -1.0
100,055 + 10478 mRNA_2110 0.56 0.5
100,242 + 10478 mRNA_2110 0.66 -1.2
100,366 - 10478 mRNA_2110 0.73 -0.5
100,579 - 10478 mRNA_2110 0.85 -0.1
100,641 - 10478 mRNA_2110 0.89 1.9
101,102 - -0.1
101,113 - -1.6
101,113 - -0.4
101,138 + 0.5
101,141 - 2.3
101,242 - 0.6
101,262 + -1.0