Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2083

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30266 to 34170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34690 to 37198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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29,512 + 0.2
29,516 - 1.0
29,525 - -0.5
29,526 + 1.7
29,530 + 1.0
29,532 - 0.2
29,535 - 0.3
29,551 - 0.7
29,700 - -0.9
29,708 + 0.5
29,710 + 1.2
29,711 + -0.0
29,738 + 0.3
29,818 - 1.1
29,851 + 1.2
29,867 + 0.0
29,886 - -0.7
30,572 - 0.8
30,587 + 1.1
30,772 - 10451 mRNA_2083 0.13 1.2
30,868 + 10451 mRNA_2083 0.15 -0.1
31,268 - 10451 mRNA_2083 0.26 -0.1
31,318 + 10451 mRNA_2083 0.27 -0.4
31,349 - 10451 mRNA_2083 0.28 0.8
31,414 - 10451 mRNA_2083 0.29 0.6
33,036 + 10451 mRNA_2083 0.71 2.0
33,217 + 10451 mRNA_2083 0.76 -0.2
33,221 + 10451 mRNA_2083 0.76 -1.5
33,509 - 10451 mRNA_2083 0.83 0.9
33,577 - 10451 mRNA_2083 0.85 2.7
33,630 + 10451 mRNA_2083 0.86 0.6
33,816 + 2.0
33,833 + -1.0
33,961 + -0.6
33,964 - 0.2
33,973 + 0.7
34,091 - 1.4
34,118 + 0.5
34,215 - -0.7
34,266 - -0.6
34,369 + 0.5
34,692 - 2.0
34,980 + 10452 mRNA_2084 0.12 0.5
35,015 + 10452 mRNA_2084 0.13 -1.6
35,019 - 10452 mRNA_2084 0.13 -1.9
35,150 + 10452 mRNA_2084 0.18 -0.7