Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2053

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2052: 10420 - KOG1399 Flavin-containing monooxygenase, at 838709 to 841749 10420 mRNA_2053: 10421 - KOG2450 Aldehyde dehydrogenase, at 842019 to 844467 10421 mRNA_2054: 10422 - KOG1994 Predicted RNA binding protein, contains G-patch and Zn-finger domains, at 844662 to 846096 10422

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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841,042 + 10420 mRNA_2052 0.77 0.2
841,219 - 10420 mRNA_2052 0.83 0.4
841,221 + 10420 mRNA_2052 0.83 -0.4
841,411 - 10420 mRNA_2052 0.89 -1.2
841,483 + 0.5
841,751 + -0.6
841,808 - 0.6
841,949 + 1.6
841,971 - -0.7
842,060 - -0.2
842,112 + -0.1
842,120 - -0.2
842,257 - 0.9
842,523 - 10421 mRNA_2053 0.21 1.4
842,523 - 10421 mRNA_2053 0.21 0.0
842,669 - 10421 mRNA_2053 0.27 -0.3
842,725 - 10421 mRNA_2053 0.29 2.0
842,786 - 10421 mRNA_2053 0.31 -0.6
842,808 - 10421 mRNA_2053 0.32 0.0
842,944 - 10421 mRNA_2053 0.38 1.0
842,954 - 10421 mRNA_2053 0.38 -1.0
842,968 - 10421 mRNA_2053 0.39 0.7
843,186 + 10421 mRNA_2053 0.48 0.1
843,232 + 10421 mRNA_2053 0.50 1.4
843,253 + 10421 mRNA_2053 0.50 -0.6
843,268 + 10421 mRNA_2053 0.51 -1.2
843,372 - 10421 mRNA_2053 0.55 0.8
843,389 - 10421 mRNA_2053 0.56 1.7
843,442 + 10421 mRNA_2053 0.58 -0.3
843,500 + 10421 mRNA_2053 0.60 0.7
843,551 - 10421 mRNA_2053 0.63 -0.2
843,602 + 10421 mRNA_2053 0.65 -0.4
843,628 - 10421 mRNA_2053 0.66 -0.8
843,684 + 10421 mRNA_2053 0.68 1.3
843,718 - 10421 mRNA_2053 0.69 -0.8
843,831 - 10421 mRNA_2053 0.74 -1.0
843,880 - 10421 mRNA_2053 0.76 0.5
843,892 + 10421 mRNA_2053 0.76 -2.0
843,970 + 10421 mRNA_2053 0.80 0.9
843,995 + 10421 mRNA_2053 0.81 -0.6
843,997 - 10421 mRNA_2053 0.81 -1.6
844,178 + 10421 mRNA_2053 0.88 -0.2
844,335 - -1.6
844,411 - 0.8
844,427 + 0.2
844,585 - -0.5
844,585 - 0.6
844,594 + 0.4
844,733 - -1.6
844,737 - 1.8
844,774 + -0.8
844,794 + 2.4
844,855 + 10422 mRNA_2054 0.13 -1.0
844,990 + 10422 mRNA_2054 0.23 -0.8
845,190 + 10422 mRNA_2054 0.37 0.0