Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2024

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2023: 10391 - K04718 SPHK sphingosine kinase, at 767575 to 770006 10391 mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770180 to 773514 10392 mRNA_2025: 10393 - SUPERFAMILY--SSF53474, at 773905 to 776623 10393

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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769,267 + 10391 mRNA_2023 0.70 1.2
769,452 - 10391 mRNA_2023 0.77 0.3
769,752 + 10391 mRNA_2023 0.90 0.4
769,860 - -1.2
770,012 - -2.0
770,015 - -0.5
770,024 + 0.9
770,032 - 1.7
770,033 + -0.7
770,052 + -1.3
770,052 + -0.3
770,177 - -0.7
770,184 + 0.5
770,187 - -0.4
770,464 - -1.4
770,745 - 10392 mRNA_2024 0.17 -0.4
770,908 - 10392 mRNA_2024 0.22 -0.7
771,044 + 10392 mRNA_2024 0.26 -0.4
771,341 - 10392 mRNA_2024 0.35 -0.3
771,354 + 10392 mRNA_2024 0.35 -1.1
771,502 + 10392 mRNA_2024 0.40 -1.1
771,633 + 10392 mRNA_2024 0.44 -0.3
771,655 - 10392 mRNA_2024 0.44 -1.3
771,722 - 10392 mRNA_2024 0.46 -0.7
772,031 + 10392 mRNA_2024 0.56 2.4
772,947 - 10392 mRNA_2024 0.83 0.4
773,452 - 0.4
773,518 + -0.2
773,670 - -0.7
773,672 + -0.6
773,808 - -1.2
773,832 - -0.4
773,836 - -0.3
773,843 - 0.0
773,843 + 1.3
773,850 + 0.3
773,864 - 1.9
773,981 - -0.8
773,997 + -1.7
774,001 + -0.2
774,117 - 0.1
774,121 - 1.3
774,147 + -0.0
774,263 + 10393 mRNA_2025 0.13 0.9
774,306 + 10393 mRNA_2025 0.15 1.0
774,388 - 10393 mRNA_2025 0.18 -2.4
774,416 - 10393 mRNA_2025 0.19 -0.9
774,440 - 10393 mRNA_2025 0.20 -1.7
774,441 + 10393 mRNA_2025 0.20 -0.3
774,441 + 10393 mRNA_2025 0.20 0.2