Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2023

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2022: 10390 - BLAST KLLA0F09339p [Kluyveromyces lactis], at 766628 to 767371 10390 mRNA_2023: 10391 - K04718 SPHK sphingosine kinase, at 767575 to 770006 10391 mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770180 to 773514 10392

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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766,710 - 10390 mRNA_2022 0.11 1.5
766,725 - 10390 mRNA_2022 0.13 -0.1
766,731 + 10390 mRNA_2022 0.14 1.8
766,850 + 10390 mRNA_2022 0.30 0.6
766,988 - 10390 mRNA_2022 0.48 -0.5
767,181 - 10390 mRNA_2022 0.74 -0.6
767,274 + 10390 mRNA_2022 0.87 0.5
767,415 - 0.2
767,538 - -0.2
767,710 - -2.3
767,753 + -0.3
768,148 + 10391 mRNA_2023 0.24 0.0
768,576 - 10391 mRNA_2023 0.41 1.0
768,625 + 10391 mRNA_2023 0.43 -1.5
768,750 - 10391 mRNA_2023 0.48 0.1
769,041 - 10391 mRNA_2023 0.60 0.5
769,116 - 10391 mRNA_2023 0.63 0.6
769,267 + 10391 mRNA_2023 0.70 1.2
769,452 - 10391 mRNA_2023 0.77 0.3
769,752 + 10391 mRNA_2023 0.90 0.4
769,860 - -1.2
770,012 - -2.0
770,015 - -0.5
770,024 + 0.9
770,032 - 1.7
770,033 + -0.7
770,052 + -1.3
770,052 + -0.3
770,177 - -0.7
770,184 + 0.5
770,187 - -0.4
770,464 - -1.4
770,745 - 10392 mRNA_2024 0.17 -0.4
770,908 - 10392 mRNA_2024 0.22 -0.7