Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1978

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1977: 10345 - HMMPfam-Eukaryotic initiation factor 4E-PF01652,SUPERFAMILY--SSF55418, at 656305 to 657635 10345 mRNA_1978: 10346 - K14409 SMG7, EST1C protein SMG7, at 657847 to 661571 10346 mRNA_1979: 10347 - KOG2362 Uncharacterized Fe-S protein, at 661978 to 663393 10347

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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657,715 + 0.3
657,974 - 1.2
657,975 + 2.7
657,991 + 0.6
657,995 - -0.5
657,995 + 1.3
658,346 + 10346 mRNA_1978 0.13 1.2
658,733 + 10346 mRNA_1978 0.24 0.2
658,870 + 10346 mRNA_1978 0.27 -0.1
658,870 + 10346 mRNA_1978 0.27 0.7
658,878 - 10346 mRNA_1978 0.28 1.1
659,311 + 10346 mRNA_1978 0.39 1.8
659,601 - 10346 mRNA_1978 0.47 0.2
659,909 - 10346 mRNA_1978 0.55 0.5
660,221 - 10346 mRNA_1978 0.64 0.5
660,313 + 10346 mRNA_1978 0.66 0.2
660,327 + 10346 mRNA_1978 0.67 1.1
660,350 + 10346 mRNA_1978 0.67 1.1
660,453 + 10346 mRNA_1978 0.70 0.3
660,523 - 10346 mRNA_1978 0.72 0.4
660,626 + 10346 mRNA_1978 0.75 0.3
660,738 + 10346 mRNA_1978 0.78 0.4
661,066 - 10346 mRNA_1978 0.86 1.0
661,190 + 10346 mRNA_1978 0.90 0.8
662,067 + 1.3
662,110 + 0.6
662,254 - 10347 mRNA_1979 0.19 2.0