Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1971

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1971: 10339 - K02429 fucP MFS transporter, FHS family, L-fucose permease, at 642692 to 644646 10339 mRNA_1972: 10340 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 645186 to 645812 10340

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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641,693 - 2.1
641,693 - 0.5
641,698 + 0.8
641,702 + -0.2
641,703 - 0.6
641,707 + -0.1
641,708 + -0.1
641,711 - 0.3
641,763 - -0.6
641,769 + 0.2
641,803 + 0.7
641,815 + -0.8
641,831 - 0.3
641,854 - 1.0
641,865 - 1.7
641,887 - 0.1
641,904 + -0.2
641,908 - -1.1
641,946 - 0.4
641,949 + -1.4
641,971 - 1.3
641,988 + -0.7
641,995 + 0.3
641,996 + -0.0
642,001 + -3.4
642,019 - -0.2
642,026 - -0.1
642,027 - -0.0
642,033 - -0.1
642,037 + 1.0
642,037 - 2.8
642,039 + -0.7
642,049 + -0.6
642,071 + 0.4
642,091 - -2.8
642,092 + -0.2
642,174 - -0.1
642,188 - 0.4
642,189 + -0.4
642,190 + 1.0
642,198 - 0.8
642,204 + -0.5
642,208 + 0.0
642,209 - -1.2
642,217 + 0.7
642,220 + 0.0
642,222 + 0.2
642,229 + 0.4
642,248 - -0.1
642,279 - -1.8
642,294 - 0.3
642,296 - 0.8
642,301 - 0.1
642,307 + 0.3
642,319 + -1.2
642,331 + 1.4
642,339 + 0.2
642,344 - -0.5
642,349 + -1.5
642,359 - 0.2
642,367 - 0.7
642,379 - 0.4
642,381 + 1.3
642,385 + 0.1
642,390 + -1.3
642,393 - 0.3
642,396 + 2.4
642,396 - 0.3
642,407 - 1.7
642,411 - 0.6
642,419 + 1.2
642,426 - -0.1
642,436 - -1.1
642,441 + 0.1
642,445 - 0.8
642,448 - 0.1
642,452 + -0.3
642,453 - 0.5
642,490 + -0.7
642,550 - 0.9
642,579 + 0.7
642,610 - -0.8
642,931 - 10339 mRNA_1971 0.12 0.1
643,292 + 10339 mRNA_1971 0.31 -0.6
643,761 - 10339 mRNA_1971 0.55 -1.1
643,783 - 10339 mRNA_1971 0.56 -0.9
644,298 - 10339 mRNA_1971 0.82 0.7
644,317 + 10339 mRNA_1971 0.83 -1.6