Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1946

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1945: 10313 - Hypothetical Protein, at 574351 to 575148 10313 mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575124 to 577080 10314 mRNA_1947: 10315 - K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase, at 577345 to 578684 10315

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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574,139 - 1.3
574,157 - -0.7
574,163 - 0.3
574,169 - 0.7
574,169 - 0.1
574,172 + -0.1
574,173 + -0.4
574,175 + 0.5
574,178 - 1.5
574,183 + 0.1
574,191 + -0.5
574,193 + -0.1
574,193 + -0.5
574,289 - -0.4
574,384 + 1.5
574,450 - 10313 mRNA_1945 0.12 2.1
574,459 + 10313 mRNA_1945 0.14 0.9
574,470 - 10313 mRNA_1945 0.15 1.4
574,475 + 10313 mRNA_1945 0.16 2.1
574,510 + 10313 mRNA_1945 0.20 2.6
574,572 + 10313 mRNA_1945 0.28 2.1
574,764 - 10313 mRNA_1945 0.52 1.4
574,803 + 10313 mRNA_1945 0.57 3.3
575,060 - 10313 mRNA_1945 0.89 0.9
575,323 - 10314 mRNA_1946 0.10 1.2
575,481 + 10314 mRNA_1946 0.18 0.9
575,652 - 10314 mRNA_1946 0.27 0.9
575,652 + 10314 mRNA_1946 0.27 1.3
576,687 + 10314 mRNA_1946 0.80 0.0
576,826 - 10314 mRNA_1946 0.87 2.6
576,969 + 1.0
576,995 + 2.6
577,010 + 1.8
577,038 - 1.0
577,122 - -0.1
577,176 + 0.3
577,437 + -0.5
577,444 + 1.8
577,548 - 10315 mRNA_1947 0.15 0.3
577,836 - 10315 mRNA_1947 0.37 0.3
577,838 + 10315 mRNA_1947 0.37 1.1
577,851 - 10315 mRNA_1947 0.38 0.9
577,987 - 10315 mRNA_1947 0.48 -0.5