Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1880

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1879: 10247 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 423115 to 424156 10247 mRNA_1880: 10248 - KOG0254 Predicted transporter (major facilitator superfamily), at 424298 to 426105 10248 mRNA_1881: 10249 - K11770 SFH1 chromatin structure-remodeling complex subunit SFH1, at 426689 to 428081 10249

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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423,367 - 10247 mRNA_1879 0.24 -1.3
423,393 - 10247 mRNA_1879 0.27 1.6
423,670 + 10247 mRNA_1879 0.53 -1.2
423,684 + 10247 mRNA_1879 0.55 -1.0
423,933 + 10247 mRNA_1879 0.79 -0.6
423,935 - 10247 mRNA_1879 0.79 0.9
423,939 - 10247 mRNA_1879 0.79 -0.7
423,981 + 10247 mRNA_1879 0.83 -0.3
424,131 - -1.3
424,314 - 0.0
424,586 - 10248 mRNA_1880 0.16 1.0
425,301 - 10248 mRNA_1880 0.55 2.2
425,436 + 10248 mRNA_1880 0.63 0.2
425,747 - 10248 mRNA_1880 0.80 0.1
426,016 - -0.7
426,195 - -0.0
426,321 - -0.3
426,326 + 0.2
426,340 + 1.0
426,344 + 0.0
426,395 - 0.8
426,397 - -0.4
426,446 - 0.4
426,465 + -0.0
426,466 + 0.3
426,473 + -0.4
426,475 - -0.3
426,476 + 0.0
426,481 + 0.9
426,487 - 1.1
426,488 + 1.5
426,489 - -0.2
426,491 + 1.0
426,494 + -3.4
426,496 + 0.3
426,496 + 0.3
426,496 + -2.1
426,497 + 0.3
426,497 + -0.9
426,527 - -2.0
426,529 - 0.5
426,532 + -1.5
426,532 + 0.1
426,638 + -1.6
426,703 + 0.1
426,728 + 0.4