Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1855

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1854: 10222 - Hypothetical Protein, at 378651 to 380549 10222 mRNA_1855: 10223 - BLAST secreted protein [Moesziomyces antarcticus], at 380959 to 382150 10223 mRNA_1856: 10224 - K10863 APTX aprataxin, at 382335 to 383661 10224

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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380,053 - 10222 mRNA_1854 0.74 0.4
380,373 - 0.1
380,387 + -1.2
380,398 - 0.4
380,402 - -0.1
380,415 - 0.4
380,575 - 1.4
380,576 + -0.8
380,685 - -0.8
380,703 + -0.4
380,720 - -0.7
380,720 - -0.8
380,723 + -0.6
380,731 + -1.9
380,826 + -0.0
380,841 + -0.5
380,882 + 0.1
380,986 - -2.2
380,992 - -0.5
380,994 + -2.0
381,140 - 10223 mRNA_1855 0.15 -0.9
381,144 + 10223 mRNA_1855 0.16 -0.6
381,145 - 10223 mRNA_1855 0.16 -0.2
381,165 + 10223 mRNA_1855 0.17 -0.3
381,408 + 10223 mRNA_1855 0.38 -0.8
381,436 - 10223 mRNA_1855 0.40 -1.5
381,703 + 10223 mRNA_1855 0.62 -0.1
381,707 + 10223 mRNA_1855 0.63 -0.9
381,710 - 10223 mRNA_1855 0.63 -0.6
381,883 + 10223 mRNA_1855 0.78 0.5
381,909 + 10223 mRNA_1855 0.80 1.4
382,332 + 0.6
382,440 - 0.3
382,465 - 1.2
382,478 + 10224 mRNA_1856 0.11 -0.2
382,605 + 10224 mRNA_1856 0.20 0.6