Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1832

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1831: 10199 - KOG3274 Uncharacterized conserved protein, AMMECR1, at 318985 to 319920 10199 mRNA_1832: 10200 - K11188 PRDX6 peroxiredoxin 6, 1-Cys peroxiredoxin, at 320371 to 321858 10200 mRNA_1833: 10201 - Hypothetical Protein, at 322426 to 322877 10201

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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319,554 + 10199 mRNA_1831 0.61 -0.4
319,679 + 10199 mRNA_1831 0.74 -0.6
319,841 - -0.6
319,843 - -1.2
319,925 + 0.1
319,982 - -0.2
319,989 - 0.8
319,991 + 0.5
319,991 + 0.4
320,002 - -0.8
320,003 - 0.6
320,008 + -0.1
320,038 + 0.6
320,043 + 1.3
320,069 + 1.8
320,088 - 0.3
320,094 - -0.2
320,105 + 0.6
320,111 - 0.4
320,111 + 1.0
320,118 + -1.2
320,126 + -0.8
320,133 - 0.1
320,136 - -0.2
320,136 - -0.0
320,137 + 0.2
320,139 - 1.2
320,140 + -1.0
320,141 - -0.3
320,143 - 1.0
320,149 - -2.5
320,166 + 0.5
320,288 + -0.0
320,310 + -0.4
320,871 + 10200 mRNA_1832 0.34 0.1
320,916 - 10200 mRNA_1832 0.37 0.1
321,001 - 10200 mRNA_1832 0.42 0.2
321,041 - 10200 mRNA_1832 0.45 0.2
321,047 + 10200 mRNA_1832 0.45 0.7
321,889 + 2.2
321,904 + 1.0
321,916 - 0.4
321,925 - -1.1
321,942 - 0.8
321,998 + 0.8
322,017 - 1.3
322,028 - -0.8
322,028 - -0.8
322,033 + 0.5
322,046 + -0.2
322,047 + 1.4
322,153 - 1.8
322,181 + -0.2
322,184 + -0.3
322,191 + 0.3
322,194 + 0.0
322,194 + -1.4
322,224 + 0.2
322,235 - -0.0
322,329 - 0.3
322,334 + -0.4
322,481 - 10201 mRNA_1833 0.12 1.3