Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1820

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287876 to 290451 10187 mRNA_1820: 10188 - Hypothetical Protein, at 290979 to 291681 10188 mRNA_1821: 10189 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 291714 to 294112 10189

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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290,007 - 10187 mRNA_1819 0.83 1.1
290,340 + 0.3
290,518 - -0.8
290,661 - -2.0
290,665 - -0.6
290,806 + 0.7
290,952 - 0.0
291,258 - 10188 mRNA_1820 0.40 0.3
291,269 - 10188 mRNA_1820 0.41 -0.7
291,271 - 10188 mRNA_1820 0.42 0.6
291,275 - 10188 mRNA_1820 0.42 -0.9
291,276 - 10188 mRNA_1820 0.42 -0.7
291,278 + 10188 mRNA_1820 0.43 0.6
291,281 - 10188 mRNA_1820 0.43 1.6
291,283 + 10188 mRNA_1820 0.43 -0.0
291,283 - 10188 mRNA_1820 0.43 0.0
291,289 + 10188 mRNA_1820 0.44 0.1
291,289 + 10188 mRNA_1820 0.44 1.2
291,290 - 10188 mRNA_1820 0.44 0.4
291,297 + 10188 mRNA_1820 0.45 1.6
291,299 + 10188 mRNA_1820 0.46 0.5
291,300 - 10188 mRNA_1820 0.46 0.3
291,317 - 10188 mRNA_1820 0.48 0.2
291,349 + 10188 mRNA_1820 0.53 0.6
291,352 - 10188 mRNA_1820 0.53 0.4
291,358 - 10188 mRNA_1820 0.54 0.0
291,370 + 10188 mRNA_1820 0.56 -0.7
291,371 + 10188 mRNA_1820 0.56 -1.7
291,416 - 10188 mRNA_1820 0.62 0.7
291,416 + 10188 mRNA_1820 0.62 -0.4
291,437 + 10188 mRNA_1820 0.65 -0.1
291,438 + 10188 mRNA_1820 0.65 0.4
291,520 + 10188 mRNA_1820 0.77 -1.6
291,552 - 10188 mRNA_1820 0.82 0.1
291,557 - 10188 mRNA_1820 0.82 1.1
291,581 + 10188 mRNA_1820 0.86 -0.3
291,582 - 10188 mRNA_1820 0.86 0.0
291,587 + 10188 mRNA_1820 0.86 0.1
291,596 + 10188 mRNA_1820 0.88 0.2
291,601 + 10188 mRNA_1820 0.88 -0.2
291,620 - -0.3
291,762 - -0.8
291,781 - 0.7
291,799 - -0.1
291,933 - 0.2
291,962 - 10189 mRNA_1821 0.10 1.7
292,036 - 10189 mRNA_1821 0.13 -0.2
292,042 - 10189 mRNA_1821 0.14 0.7
292,049 + 10189 mRNA_1821 0.14 1.3
292,064 - 10189 mRNA_1821 0.15 1.4
292,222 - 10189 mRNA_1821 0.21 -1.2
292,240 + 10189 mRNA_1821 0.22 0.7
292,380 - 10189 mRNA_1821 0.28 0.7
292,403 - 10189 mRNA_1821 0.29 -2.0
292,501 - 10189 mRNA_1821 0.33 -0.3