Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1818

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285247 to 286558 10185 mRNA_1818: 10186 - Hypothetical Protein, at 286917 to 287591 10186 mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287876 to 290451 10187

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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286,669 - -0.9
286,677 + -0.8
286,696 + 1.0
286,697 + 0.9
286,701 + -2.1
286,728 + 0.3
286,807 - -2.2
286,825 - 0.5
286,825 - 1.2
286,839 - 0.4
286,841 - -0.3
286,841 - -0.8
286,849 - -0.8
286,849 - -1.7
286,852 - -1.2
286,855 - -2.1
286,862 - 0.3
286,871 + 0.2
286,887 + 0.4
287,167 + 10186 mRNA_1818 0.37 -0.1
287,172 - 10186 mRNA_1818 0.38 1.4
287,175 + 10186 mRNA_1818 0.38 1.5
287,196 - 10186 mRNA_1818 0.41 -0.7
287,199 + 10186 mRNA_1818 0.42 1.0
287,311 - 10186 mRNA_1818 0.58 -0.1
287,331 - 10186 mRNA_1818 0.61 0.4
287,335 - 10186 mRNA_1818 0.62 0.5
287,359 - 10186 mRNA_1818 0.65 -0.1
287,382 + 10186 mRNA_1818 0.69 0.6
287,395 + 10186 mRNA_1818 0.71 -0.8
287,400 - 10186 mRNA_1818 0.72 -0.6
287,403 + 10186 mRNA_1818 0.72 -0.9
287,406 + 10186 mRNA_1818 0.72 -1.3
287,489 + 10186 mRNA_1818 0.85 0.4
287,533 + -0.8
287,645 + -1.1
287,654 - 0.6
287,656 + 2.3
287,660 - -0.4
287,712 - -0.2
287,721 + 0.3
287,778 - -0.8
287,778 + 0.4
287,778 + 1.5
287,795 + 0.7
287,803 + -1.5
287,853 - -0.4
287,967 + -0.5
287,995 - 0.4
288,007 - 1.1
288,010 + -0.2
288,014 + -0.6
288,017 - 0.4
288,018 + -1.3
288,019 + 0.1
288,037 + 0.6
288,151 + 10187 mRNA_1819 0.11 1.3
288,164 + 10187 mRNA_1819 0.11 -0.3
288,171 + 10187 mRNA_1819 0.11 0.3
288,472 + 10187 mRNA_1819 0.23 0.8
288,479 + 10187 mRNA_1819 0.23 0.2
288,497 + 10187 mRNA_1819 0.24 -0.5