Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1814

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1813: 10181 - K04352 RASA1, RASGAP Ras GTPase-activating protein 1, at 269173 to 274604 10181 mRNA_1814: 10182 - K00858 ppnK, NADK NAD+ kinase, at 275166 to 278698 10182

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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274,633 - 2.5
274,909 + 1.5
275,050 + 0.7
275,172 - -1.6
275,184 + 0.4
275,190 + -0.7
275,190 + -0.1
275,191 + -1.5
275,199 - 1.3
275,199 + 1.5
275,200 - 0.3
275,203 + -0.8
275,207 + 0.0
275,340 - -0.3
275,342 - 0.1
275,350 + -0.8
275,353 - 0.4
275,374 - -0.9
275,512 - -0.1
275,515 - 1.3
275,520 + 10182 mRNA_1814 0.10 -0.1
275,690 - 10182 mRNA_1814 0.15 -1.8
275,798 - 10182 mRNA_1814 0.18 -0.6
275,802 + 10182 mRNA_1814 0.18 1.4
275,848 + 10182 mRNA_1814 0.19 0.8
276,553 + 10182 mRNA_1814 0.39 1.0
276,806 - 10182 mRNA_1814 0.46 0.3
276,821 - 10182 mRNA_1814 0.47 0.7
276,821 + 10182 mRNA_1814 0.47 0.7
277,426 - 10182 mRNA_1814 0.64 0.4
277,558 - 10182 mRNA_1814 0.68 -0.7
278,177 - 10182 mRNA_1814 0.85 -0.6
278,437 + -1.0
278,571 - 1.4
278,586 - -0.1
278,603 + -0.8
278,859 - 0.3
278,871 - 0.3
279,025 - 0.2
279,153 - 0.4
279,154 - -0.3
279,168 + 0.3
279,183 - 0.3
279,395 - -1.3