Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1775

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1774: 10142 - Hypothetical Protein, at 173181 to 173906 10142 mRNA_1775: 10143 - KOG1289 Amino acid transporters, at 174192 to 176320 10143 mRNA_1776: 10144 - K01869 LARS, leuS leucyl-tRNA synthetase, at 177304 to 181065 10144

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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173,224 + 0.0
173,309 - 10142 mRNA_1774 0.18 -0.3
173,366 + 10142 mRNA_1774 0.25 0.1
173,398 + 10142 mRNA_1774 0.30 0.6
173,504 + 10142 mRNA_1774 0.44 -0.7
173,512 + 10142 mRNA_1774 0.46 -0.7
173,596 + 10142 mRNA_1774 0.57 -1.3
173,634 + 10142 mRNA_1774 0.62 -0.1
173,650 + 10142 mRNA_1774 0.65 -1.1
173,899 - -0.8
173,986 + 0.6
174,073 - -0.1
174,104 - -0.8
174,126 + 1.2
174,238 + -0.5
174,377 + 0.5
174,562 - 10143 mRNA_1775 0.17 -0.1
174,565 + 10143 mRNA_1775 0.18 0.5
175,104 - 10143 mRNA_1775 0.43 -0.9
175,249 - 10143 mRNA_1775 0.50 -0.9
175,290 - 10143 mRNA_1775 0.52 -0.8
175,297 + 10143 mRNA_1775 0.52 0.1
175,464 - 10143 mRNA_1775 0.60 0.6
175,541 - 10143 mRNA_1775 0.63 0.1
175,853 - 10143 mRNA_1775 0.78 -0.2
175,873 + 10143 mRNA_1775 0.79 0.1
175,963 - 10143 mRNA_1775 0.83 -0.1
175,969 + 10143 mRNA_1775 0.83 0.6
176,010 - 10143 mRNA_1775 0.85 1.3
176,089 - 10143 mRNA_1775 0.89 -0.6
176,151 + -0.0
176,265 + -0.3
176,295 - 1.1
176,309 - -0.0
176,401 - 0.9
176,432 + 0.5
176,432 - 2.2
176,441 - 0.5
176,442 + -0.1
176,459 + -0.3
176,471 - -0.8
176,473 - -0.3
176,499 + -0.6
176,515 + 1.6
176,516 + -0.3
176,517 - -0.9
176,527 + 0.1
176,572 + -0.3
176,575 - 0.3
176,680 + -0.1
176,723 - 1.2
176,749 - 0.9
176,889 + 1.1
177,019 - 0.5
177,025 - -0.4
177,038 + 1.4
177,050 + -1.1
177,064 - -1.2
177,200 - -0.7
177,201 + 1.1