Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1768

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1767: 10135 - HMMPfam-F-box-like-PF12937, at 154773 to 156142 10135 mRNA_1768: 10136 - K01858 INO1, ISYNA1 myo-inositol-1-phosphate synthase, at 156346 to 158351 10136 mRNA_1769: 10137 - Interpro F-box-like 0, at 159108 to 161176 10137

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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155,889 - 10135 mRNA_1767 0.81 0.5
155,896 - 10135 mRNA_1767 0.82 -2.6
155,922 + 10135 mRNA_1767 0.84 0.9
155,995 - 10135 mRNA_1767 0.89 0.3
155,998 - 10135 mRNA_1767 0.89 0.3
156,003 + 10135 mRNA_1767 0.90 -0.6
156,026 + 2.1
156,175 + 0.1
156,185 - -0.0
156,188 + 0.7
156,221 - 0.5
156,323 - -0.4
156,342 + 1.4
156,385 - -1.5
156,471 - -0.4
156,553 - 10136 mRNA_1768 0.10 -0.4
156,564 + 10136 mRNA_1768 0.11 -1.2
156,594 - 10136 mRNA_1768 0.12 -2.0
156,611 + 10136 mRNA_1768 0.13 0.7
156,802 + 10136 mRNA_1768 0.23 0.6
157,183 - 10136 mRNA_1768 0.42 0.1
157,228 + 10136 mRNA_1768 0.44 -0.2
157,331 + 10136 mRNA_1768 0.49 0.5
157,527 - 10136 mRNA_1768 0.59 -0.2
157,642 - 10136 mRNA_1768 0.65 -0.7
157,808 - 10136 mRNA_1768 0.73 -0.6
157,837 + 10136 mRNA_1768 0.74 -0.7
157,992 + 10136 mRNA_1768 0.82 -0.6
158,107 - 10136 mRNA_1768 0.88 -0.4
158,117 + 10136 mRNA_1768 0.88 0.4
158,121 - 10136 mRNA_1768 0.88 0.4
158,230 - 0.8
158,550 + 0.1
158,554 + -0.1
158,571 + 0.0
158,585 + -0.3
158,671 + -0.3
158,704 - 0.3
158,711 - 2.8
158,724 - 0.3
158,736 - -1.1
158,738 + -0.2
158,741 + -0.0
158,758 + 1.3
158,834 - 0.5
158,845 - 0.2
158,856 + -0.2
158,859 - -1.1
158,867 - -0.2
158,867 + -0.5
158,875 + -0.3
158,879 - 0.6
158,879 + 1.1
158,900 + 0.1
158,901 - -0.4
158,914 + -1.6
158,915 - -1.6
158,976 - 0.0
158,981 + 1.5
158,982 - -0.3
158,987 + 0.4
158,988 - 1.1
158,992 - 0.2
158,995 + 0.3
158,999 + 1.0
159,001 - 0.1
159,010 - -0.6
159,011 + 0.1
159,017 + -0.2
159,022 + 1.5
159,036 + -4.6
159,036 + 0.7
159,042 + -0.4
159,055 + -0.7
159,183 - -0.6
159,225 + -1.3
159,329 - 10137 mRNA_1769 0.11 0.7
159,339 - 10137 mRNA_1769 0.11 -0.3
159,348 + 10137 mRNA_1769 0.12 1.5