Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1757

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1756: 10124 - KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A, at 124866 to 126194 10124 mRNA_1757: 10125 - KOG1426 FOG RCC1 domain, at 126348 to 129051 10125 mRNA_1758: 10126 - KOG2998 Uncharacterized conserved protein, at 129758 to 131068 10126

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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125,373 - 10124 mRNA_1756 0.38 1.2
125,397 - 10124 mRNA_1756 0.40 -0.0
125,429 - 10124 mRNA_1756 0.42 -0.7
125,539 - 10124 mRNA_1756 0.51 -0.0
125,562 - 10124 mRNA_1756 0.52 -0.3
125,567 + 10124 mRNA_1756 0.53 0.8
125,827 + 10124 mRNA_1756 0.72 -2.2
125,889 + 10124 mRNA_1756 0.77 -0.6
125,943 + 10124 mRNA_1756 0.81 -0.7
125,948 + 10124 mRNA_1756 0.81 0.6
126,167 + 0.3
126,333 - -0.3
126,418 - 0.4
126,429 - 2.4
126,434 + -2.1
126,593 - -0.4
126,603 - 0.4
126,757 + 10125 mRNA_1757 0.15 2.0
126,880 - 10125 mRNA_1757 0.20 -0.3
126,985 - 10125 mRNA_1757 0.24 -0.0
127,023 - 10125 mRNA_1757 0.25 1.5
127,046 - 10125 mRNA_1757 0.26 -0.5
127,146 - 10125 mRNA_1757 0.30 -0.1
127,237 + 10125 mRNA_1757 0.33 -1.4
127,444 + 10125 mRNA_1757 0.41 -0.7
127,596 + 10125 mRNA_1757 0.46 0.9
128,211 + 10125 mRNA_1757 0.69 -0.1
128,521 - 10125 mRNA_1757 0.80 -0.3
128,899 + 1.4
129,035 + -1.3
129,063 + -0.8
129,210 + -0.6
129,650 - -1.1
129,654 - -0.3
129,675 + -0.7
129,805 + 1.4