Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1749

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108076 to 110507 10116 mRNA_1749: 10117 - Hypothetical Protein, at 111051 to 112240 10117 mRNA_1750: 10118 - K16185 RRAGA_B Ras-related GTP-binding protein A/B, at 113201 to 114530 10118

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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110,213 - 10116 mRNA_1748 0.88 -0.4
110,232 + 10116 mRNA_1748 0.89 0.8
110,385 - 0.5
110,540 - -3.0
110,567 + -2.2
110,689 - -0.7
110,716 - 2.6
110,724 - 0.6
110,724 + 0.0
110,731 + -0.3
110,761 - -1.4
110,778 + -1.7
110,843 + -1.3
110,861 - 1.2
110,878 + -0.7
110,928 + -0.9
110,947 - -0.0
111,000 + 0.7
111,027 - -0.2
111,038 - 1.4
111,197 + 10117 mRNA_1749 0.12 0.1
111,722 - 10117 mRNA_1749 0.56 -0.8
111,732 - 10117 mRNA_1749 0.57 -0.1
112,035 + 10117 mRNA_1749 0.83 1.4
112,107 - 10117 mRNA_1749 0.89 0.4
112,165 + 0.4
112,176 + -0.1
112,178 + -0.4
112,226 - -2.0
112,471 - -0.6
112,486 + -0.3
112,487 + 0.0
112,505 + 1.8
112,511 + -0.3
112,513 - 0.4
112,522 + -0.2
112,589 + 0.6
112,612 + 0.7
112,612 + 0.2
112,618 - -1.4
112,638 - -0.5
112,657 + -0.0
112,660 + 0.1
112,664 - 0.1
112,666 - -0.3
112,685 - 0.5
112,685 + 0.8
112,686 + -2.8
112,687 + 0.4
112,687 - -1.3
112,712 - 0.1
112,776 - -0.1
112,823 + 0.8
112,827 - 0.7
112,831 - 0.4
112,854 - 1.4
112,855 + -0.1
112,857 + -1.3
112,858 + 0.6
112,858 - 1.9
112,863 + -1.0
112,870 + 0.3
112,878 + -0.1
112,901 - -0.8
112,910 + -0.2
112,910 + -0.0
112,910 - 1.2
112,911 + 1.3
112,911 + 0.6
112,911 + 0.1
112,911 - -0.7
112,912 + 0.3
112,919 + -0.7
112,927 + 0.7
112,939 + 0.2
112,944 + 0.1
112,956 + -0.8
112,971 - -0.6
112,998 - 0.0
113,001 + 0.2
113,005 - -1.6
113,007 + 0.3
113,017 + -0.0
113,017 + -0.6
113,168 + 0.4