Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1748

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1747: 10115 - Hypothetical Protein, at 106989 to 107598 10115 mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108076 to 110507 10116 mRNA_1749: 10117 - Hypothetical Protein, at 111051 to 112240 10117

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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107,368 - 10115 mRNA_1747 0.62 0.6
107,437 - 10115 mRNA_1747 0.73 -2.1
107,453 + 10115 mRNA_1747 0.76 2.6
107,563 - 0.6
107,584 + -1.2
107,730 - 0.8
107,757 - -0.8
107,781 - 0.2
107,819 + -0.2
108,057 - 0.9
108,058 + -0.4
108,398 + 10116 mRNA_1748 0.13 -1.6
108,807 + 10116 mRNA_1748 0.30 -0.0
108,983 + 10116 mRNA_1748 0.37 0.7
109,077 - 10116 mRNA_1748 0.41 -0.1
109,351 + 10116 mRNA_1748 0.52 -0.4
109,812 + 10116 mRNA_1748 0.71 -0.2
109,849 + 10116 mRNA_1748 0.73 0.4
109,968 + 10116 mRNA_1748 0.78 0.5
110,213 - 10116 mRNA_1748 0.88 -0.4
110,232 + 10116 mRNA_1748 0.89 0.8
110,385 - 0.5
110,540 - -3.0
110,567 + -2.2
110,689 - -0.7
110,716 - 2.6
110,724 - 0.6
110,724 + 0.0
110,731 + -0.3
110,761 - -1.4
110,778 + -1.7
110,843 + -1.3
110,861 - 1.2
110,878 + -0.7
110,928 + -0.9
110,947 - -0.0
111,000 + 0.7
111,027 - -0.2
111,038 - 1.4
111,197 + 10117 mRNA_1749 0.12 0.1