Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1670

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1669: 10037 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849506 to 850957 10037 mRNA_1670: 10038 - K15918 GLYK D-glycerate 3-kinase, at 851334 to 852644 10038 mRNA_1671: 10039 - K13344 PEX13 peroxin-13, at 853353 to 854767 10039

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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850,462 - 10037 mRNA_1669 0.66 0.6
850,727 - 10037 mRNA_1669 0.84 0.5
850,766 + 10037 mRNA_1669 0.87 -0.5
850,921 + -1.0
851,019 - 0.5
851,037 - -0.7
851,047 - 0.8
851,047 - 0.6
851,049 + -0.4
851,055 + -0.1
851,062 - 0.3
851,063 - 1.2
851,082 - -0.0
851,085 + -0.5
851,092 + -0.5
851,098 - -1.0
851,099 - 1.0
851,105 + 0.7
851,142 + 0.0
851,186 + -0.3
851,343 + 0.8
851,344 + 0.4
851,346 - -0.3
851,452 + 0.1
851,460 - 0.4
851,670 + 10038 mRNA_1670 0.26 -1.0
851,738 - 10038 mRNA_1670 0.31 -0.5
851,787 - 10038 mRNA_1670 0.35 -1.1
852,090 - 10038 mRNA_1670 0.58 -0.2
852,096 + 10038 mRNA_1670 0.58 0.3
852,223 - 10038 mRNA_1670 0.68 -1.6
852,228 - 10038 mRNA_1670 0.68 0.4
852,378 - 10038 mRNA_1670 0.80 -0.8
852,643 - 0.9
852,811 - 1.2
852,952 + 1.2
852,956 - -0.1
852,976 - 0.5
853,104 - -0.2
853,126 - -1.1
853,132 + 0.1
853,247 - -2.9
853,406 + -3.4