Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1661

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1660: 10028 - Hypothetical Protein, at 833434 to 834294 10028 mRNA_1661: 10029 - K13979 yahK uncharacterized zinc-type alcohol dehydrogenase-like protein, at 834385 to 835559 10029 mRNA_1662: 10030 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 836200 to 837347 10030

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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833,471 + -1.2
833,506 + -0.5
833,523 - 10028 mRNA_1660 0.10 0.2
833,659 + 10028 mRNA_1660 0.26 0.3
833,805 + 10028 mRNA_1660 0.43 0.2
833,930 + 10028 mRNA_1660 0.58 -0.7
833,931 - 10028 mRNA_1660 0.58 -0.7
834,479 - 1.6
834,543 - 10029 mRNA_1661 0.13 0.1
834,553 + 10029 mRNA_1661 0.14 -1.3
834,634 + 10029 mRNA_1661 0.21 0.8
834,974 - 10029 mRNA_1661 0.50 0.3
835,255 + 10029 mRNA_1661 0.74 -0.0
835,422 - 10029 mRNA_1661 0.88 0.3
835,733 - -0.0
835,801 + 0.4
835,823 - -0.4
835,843 + -0.2
835,857 - -0.0
835,971 + 0.1
835,996 - -2.8
836,183 + 1.8
836,275 + 0.5
836,337 + 10030 mRNA_1662 0.12 1.2
836,484 + 10030 mRNA_1662 0.25 2.2