Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1601

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692318 to 693945 9968 mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694292 to 695992 9969 mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696270 to 698823 9970

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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693,541 + 9968 mRNA_1600 0.75 -0.9
693,667 + 9968 mRNA_1600 0.83 -1.1
693,850 - 0.1
693,867 - 0.9
694,029 - 0.3
694,041 + 0.5
694,276 - -1.2
694,756 + 9969 mRNA_1601 0.27 0.5
695,159 + 9969 mRNA_1601 0.51 0.3
695,182 + 9969 mRNA_1601 0.52 0.3
695,387 - 9969 mRNA_1601 0.64 0.9
695,434 - 9969 mRNA_1601 0.67 0.2
695,443 + 9969 mRNA_1601 0.68 0.4
695,456 - 9969 mRNA_1601 0.68 -0.2
695,583 + 9969 mRNA_1601 0.76 0.1
695,589 + 9969 mRNA_1601 0.76 -0.5
695,721 - 9969 mRNA_1601 0.84 -1.0
695,861 + -1.1
695,864 - -1.0
695,886 - -1.2
695,909 - -0.6
696,056 + 0.9
696,170 - -0.6
696,187 + -0.1
696,303 - -0.5
696,352 - 1.8
696,426 + -0.5
696,513 - -0.4
696,638 + 9970 mRNA_1602 0.14 1.8
696,736 - 9970 mRNA_1602 0.18 0.0
696,744 - 9970 mRNA_1602 0.19 -1.7