Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1515

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1514: 9882 - K07050 AARSD1, ALAX misacylated tRNA(Ala) deacylase, at 486604 to 488267 9882 mRNA_1515: 9883 - HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997, at 488446 to 491742 9883 mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492148 to 493899 9884

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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487,453 - 9882 mRNA_1514 0.51 1.2
487,913 - 9882 mRNA_1514 0.79 -0.1
488,058 + 9882 mRNA_1514 0.87 -0.2
488,073 + 9882 mRNA_1514 0.88 -0.5
488,166 - 1.9
488,185 - 0.7
488,341 - 0.4
488,372 + -0.7
488,382 - -0.7
488,493 - 0.7
488,498 - -0.4
488,500 - -0.9
488,505 + 0.0
488,513 + 1.5
488,521 + 0.1
488,647 + 0.6
488,793 + 9883 mRNA_1515 0.11 0.9
488,822 + 9883 mRNA_1515 0.11 0.0
488,926 + 9883 mRNA_1515 0.15 0.5
489,243 + 9883 mRNA_1515 0.24 0.2
489,275 + 9883 mRNA_1515 0.25 1.0
489,584 - 9883 mRNA_1515 0.35 0.1
489,709 - 9883 mRNA_1515 0.38 0.5
489,788 + 9883 mRNA_1515 0.41 -0.4
490,130 + 9883 mRNA_1515 0.51 -0.0
490,246 - 9883 mRNA_1515 0.55 0.7
490,385 - 9883 mRNA_1515 0.59 0.2
490,566 - 9883 mRNA_1515 0.64 0.5
490,610 - 9883 mRNA_1515 0.66 1.4
491,018 + 9883 mRNA_1515 0.78 -0.5
491,321 - 9883 mRNA_1515 0.87 -0.1
491,327 - 9883 mRNA_1515 0.87 0.6
491,483 - 1.0
491,490 + 0.3
491,616 - 0.8
491,636 - -1.0
491,753 + 0.1
491,756 - 0.6
491,758 + -1.4
491,759 + -0.5
491,896 - 0.2
491,900 + -0.5
491,904 - 0.4
491,910 - -0.5
491,912 + 1.6
491,932 - 1.0
492,072 + 0.1
492,074 - 0.3
492,076 - 0.5
492,128 + 0.4
492,133 - -0.5
492,204 - 1.0