Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1345

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1344: 9712 - K06063 SNW1, SKIIP, SKIP SNW domain-containing protein 1, at 45254 to 47593 9712 mRNA_1345: 9713 - KOG2533 Permease of the major facilitator superfamily, at 47713 to 50221 9713 mRNA_1346: 9714 - Hypothetical Protein, at 50487 to 51327 9714

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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47,611 + 0.3
47,616 - -0.4
47,746 - 1.5
47,747 - 0.9
47,751 + -0.6
47,754 - 0.7
47,763 - -0.5
47,764 + 0.4
47,855 + 0.8
47,901 - 0.3
47,907 - -0.7
48,006 - 9713 mRNA_1345 0.12 0.2
48,058 - 9713 mRNA_1345 0.14 -0.5
48,095 + 9713 mRNA_1345 0.15 -0.5
48,185 + 9713 mRNA_1345 0.19 0.4
48,605 - 9713 mRNA_1345 0.36 0.0
48,606 - 9713 mRNA_1345 0.36 0.6
48,775 - 9713 mRNA_1345 0.42 -0.1
48,906 - 9713 mRNA_1345 0.48 0.1
48,928 - 9713 mRNA_1345 0.48 -0.5
48,933 - 9713 mRNA_1345 0.49 -2.2
48,936 - 9713 mRNA_1345 0.49 -0.5
48,938 - 9713 mRNA_1345 0.49 -1.0
48,945 + 9713 mRNA_1345 0.49 -0.4
49,216 - 9713 mRNA_1345 0.60 -0.1
49,391 + 9713 mRNA_1345 0.67 -0.0
49,422 + 9713 mRNA_1345 0.68 -0.4
49,489 + 9713 mRNA_1345 0.71 -1.6
49,497 - 9713 mRNA_1345 0.71 0.2
49,516 + 9713 mRNA_1345 0.72 -1.0
49,602 - 9713 mRNA_1345 0.75 -0.2
49,648 - 9713 mRNA_1345 0.77 -0.6
49,818 - 9713 mRNA_1345 0.84 -0.0
49,820 + 9713 mRNA_1345 0.84 -0.2
49,921 - 9713 mRNA_1345 0.88 0.1
49,962 - 9713 mRNA_1345 0.90 0.2
50,203 + -1.1
50,239 + 1.0
50,432 + -0.1
50,481 + 0.0
50,484 - 0.2
50,517 + 0.8
50,688 + 9714 mRNA_1346 0.24 0.8
50,711 + 9714 mRNA_1346 0.27 0.0
50,725 + 9714 mRNA_1346 0.28 1.2
50,821 - 9714 mRNA_1346 0.40 -2.1
50,856 + 9714 mRNA_1346 0.44 0.9
51,021 - 9714 mRNA_1346 0.63 -0.6
51,118 + 9714 mRNA_1346 0.75 0.2