Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1838 to 6021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1 + 2.0
1 + 0.3
1 + 0.4
1 + 0.5
1 + -0.6
2 + 0.4
2 + 0.4
5 + 0.5
18 + -0.1
30 + 0.4
37 + -0.9
37 + 1.0
41 + 0.2
42 + -0.3
44 + -0.4
49 + -0.9
49 + 0.3
50 + 0.5
54 + 0.4
58 - -0.6
60 - -0.0
60 + 0.3
60 - -1.2
61 - -0.3
61 + -0.7
63 + -0.2
63 + 0.3
63 + 0.2
63 + 0.7
63 + 0.5
63 + 0.4
64 + -2.2
66 - -0.3
66 + 0.3
70 + 0.4
70 + 0.4
70 - 0.5
71 + -1.6
73 + -0.1
75 - -1.9
77 - -1.8
78 + -1.2
78 - 0.1
78 + -0.3
78 + -0.3
78 + -1.9
78 + -0.7
78 + 1.3
78 + -1.0
78 + -0.9
79 + -0.8
81 - -0.1
81 - 1.0
82 + 0.7
85 + -0.3
104 + 0.2
126 + -0.7
126 + 2.3
128 - 0.9
135 + 1.5
142 + 0.5
150 + 0.4
154 + -0.9
157 + -2.4
171 - 1.9
171 + -0.6
172 + -0.3
172 + -0.2
175 - 0.5
176 - 0.0
177 - -0.3
177 - 0.6
191 - 0.1
192 + 0.5
192 + -0.3
192 + -0.1
193 + 0.8
193 + -0.8
193 + -0.5
198 - -0.0
218 + 0.8
225 + -0.6
235 + 1.7
242 + -0.7
263 - 1.2
293 + -0.6
303 + 0.3
333 - -1.0
339 - 0.2
348 + 0.7
349 + -0.1
377 - -1.0
381 - 0.2
469 + -0.6
487 - 9298 mRNA_930 0.10 0.3
722 + 9298 mRNA_930 0.29 0.8
1,641 - -0.5
1,656 - -1.7
1,768 - -0.9
1,778 - 0.7
1,794 + 0.7