Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_862

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_861: 9229 - K03513 POLM DNA polymerase mu, at 2063792 to 2065447 9229 mRNA_862: 9230 - KOG2867 Phosphotyrosyl phosphatase activator, at 2065733 to 2067114 9230 mRNA_863: 9231 - K11254 H4 histone H4, at 2067725 to 2068182 9231

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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2,064,929 + 9229 mRNA_861 0.69 1.4
2,064,936 - 9229 mRNA_861 0.69 -0.7
2,064,949 - 9229 mRNA_861 0.70 0.3
2,065,238 - 9229 mRNA_861 0.87 0.2
2,065,358 - -0.5
2,065,373 + 0.4
2,065,381 + -0.5
2,065,430 + 0.1
2,065,501 + -0.4
2,065,509 + 0.9
2,065,510 + -0.3
2,065,510 - 2.5
2,065,517 - 1.9
2,065,524 + -0.1
2,065,524 - -0.3
2,065,525 + 0.1
2,065,536 + -1.5
2,065,537 - 0.5
2,065,537 - 0.3
2,065,540 + -0.3
2,065,545 - 0.7
2,065,546 - 2.9
2,065,546 - -0.6
2,065,547 + 0.3
2,065,548 + 0.4
2,065,551 + -0.2
2,065,557 + 1.1
2,065,559 - 2.0
2,065,559 + -0.3
2,065,560 + 0.1
2,065,561 + 0.6
2,065,562 + 0.0
2,065,562 - -0.9
2,065,566 + -0.4
2,065,567 + -0.8
2,065,568 - 0.1
2,065,568 + -0.6
2,065,569 - -0.2
2,065,570 + -0.1
2,065,571 - -1.4
2,065,572 - 0.8
2,065,574 - 0.8
2,065,574 - 0.5
2,065,575 - 1.9
2,065,575 + -1.2
2,065,575 + 0.8
2,065,576 + 0.5
2,065,576 - -0.4
2,065,577 - -0.2
2,065,577 - -1.4
2,065,578 + -0.9
2,065,579 + 0.1
2,065,581 - 0.7
2,065,582 + -0.4
2,065,582 + 1.2
2,065,585 + 0.2
2,065,586 + 1.5
2,065,588 + 0.9
2,065,602 - 0.6
2,065,646 + 0.3
2,065,668 - -0.9
2,065,669 + 0.5
2,065,673 + -0.3
2,065,674 - -1.3
2,065,679 - 0.6
2,065,685 + -0.6
2,065,730 + 1.1
2,065,815 - 1.3
2,065,824 + -1.0
2,065,827 - 0.1
2,065,957 - 9230 mRNA_862 0.16 1.2
2,065,960 - 9230 mRNA_862 0.16 -0.2
2,065,962 + 9230 mRNA_862 0.17 -0.4
2,065,977 - 9230 mRNA_862 0.18 0.9
2,065,989 + 9230 mRNA_862 0.19 -0.1
2,066,101 + 9230 mRNA_862 0.27 0.9
2,066,247 + 9230 mRNA_862 0.37 -0.1
2,066,268 + 9230 mRNA_862 0.39 -0.4
2,066,346 + 9230 mRNA_862 0.44 0.4
2,066,504 - 9230 mRNA_862 0.56 -0.2
2,066,556 - 9230 mRNA_862 0.60 -0.9
2,066,576 - 9230 mRNA_862 0.61 0.4
2,066,787 + 9230 mRNA_862 0.76 0.4
2,066,839 - 9230 mRNA_862 0.80 -1.0
2,066,916 - 9230 mRNA_862 0.86 -0.8
2,066,945 + 9230 mRNA_862 0.88 0.7
2,066,956 - 9230 mRNA_862 0.88 0.3
2,067,096 - 0.5
2,067,107 + 1.1
2,067,124 + 0.7
2,067,135 + 0.1
2,067,142 + -0.8
2,067,199 + 0.1
2,067,218 - 0.8
2,067,227 - -1.1
2,067,231 + -0.0
2,067,239 - 2.0
2,067,241 + 0.2
2,067,259 - 0.7
2,067,380 + -0.4
2,067,393 - 0.3
2,067,432 - 0.4
2,067,532 - -0.0
2,067,595 + 0.4
2,067,598 + 0.5
2,067,642 + 0.1
2,067,666 - 0.2
2,067,719 + 0.4
2,067,839 - 9231 mRNA_863 0.25 0.4
2,067,850 + 9231 mRNA_863 0.27 -0.4
2,067,966 - 9231 mRNA_863 0.53 -0.2
2,068,003 - 9231 mRNA_863 0.61 -0.2
2,068,060 + 9231 mRNA_863 0.73 1.1