Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_807

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_806: 9174 - KOG1515 Arylacetamide deacetylase, at 1915696 to 1917845 9174 mRNA_807: 9175 - Hypothetical Protein, at 1918454 to 1920655 9175 mRNA_808: 9176 - K00053 ilvC ketol-acid reductoisomerase, at 1921061 to 1923091 9176

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,917,510 - 9174 mRNA_806 0.84 -1.7
1,917,579 - 9174 mRNA_806 0.88 0.1
1,917,901 + 1.2
1,917,903 + 0.1
1,917,904 - 0.6
1,917,904 + -0.8
1,917,919 - -1.0
1,917,920 - 0.1
1,917,922 + -0.6
1,917,922 + -0.2
1,917,925 + -1.5
1,917,927 + 0.3
1,917,932 - 0.4
1,917,934 + -1.2
1,917,960 - 0.7
1,917,964 - 0.2
1,917,967 + 0.1
1,917,972 + -1.8
1,917,981 - -1.5
1,918,152 - 0.3
1,918,173 - 0.2
1,918,174 + 0.6
1,918,178 - 0.3
1,918,184 - -0.0
1,918,194 - -0.4
1,918,309 - 1.3
1,918,466 + 1.1
1,918,466 + 1.5
1,918,467 - -0.0
1,918,493 - 0.1
1,918,505 + 0.1
1,918,655 - 0.7
1,919,066 - 9175 mRNA_807 0.28 1.1
1,919,237 - 9175 mRNA_807 0.36 0.5
1,919,259 - 9175 mRNA_807 0.37 -0.7
1,919,379 - 9175 mRNA_807 0.42 -0.9
1,919,533 + 9175 mRNA_807 0.49 0.3
1,919,670 + 9175 mRNA_807 0.55 -0.8
1,919,834 + 9175 mRNA_807 0.63 -0.2
1,920,234 + 9175 mRNA_807 0.81 0.4
1,920,425 + 9175 mRNA_807 0.90 0.1
1,920,456 + 0.9
1,920,852 + 0.4
1,920,875 + -1.6
1,920,934 - 0.8
1,920,956 + -0.0
1,920,991 - -0.0
1,920,998 - -0.8
1,921,003 - 0.5
1,921,004 - 0.3
1,921,005 - -1.2
1,921,012 + 0.3
1,921,017 + 1.2
1,921,026 - 0.2
1,921,044 + -1.9