Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_797

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_796: 9164 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1893932 to 1897116 9164 mRNA_797: 9165 - K02265 COX5B cytochrome c oxidase subunit 5b, at 1897731 to 1898518 9165 mRNA_798: 9166 - K15376 GPHN gephyrin, at 1898956 to 1901377 9166

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,896,830 - -0.4
1,897,130 - -0.3
1,897,132 + -0.8
1,897,160 + 0.2
1,897,265 - 1.0
1,897,292 - 0.1
1,897,404 + -1.4
1,897,405 - 1.3
1,897,416 + 0.2
1,897,427 + -0.3
1,897,432 + 0.3
1,897,436 + 0.1
1,897,437 - -0.2
1,897,445 - -0.6
1,897,448 - 0.8
1,897,465 + -0.0
1,897,495 - -0.1
1,897,588 + 1.3
1,897,596 + 0.7
1,898,347 - 9165 mRNA_797 0.78 -1.8
1,898,360 - 9165 mRNA_797 0.80 0.5
1,899,044 + -1.4
1,899,261 + 9166 mRNA_798 0.13 -0.2
1,899,265 - 9166 mRNA_798 0.13 -0.1