Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_546

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_545: 8913 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1295068 to 1298428 8913 mRNA_546: 8914 - K00799 GST, gst glutathione S-transferase, at 1298658 to 1299726 8914 mRNA_547: 8915 - KOG2385 Uncharacterized conserved protein, at 1299978 to 1303835 8915

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,298,089 + 8913 mRNA_545 0.90 1.0
1,298,222 + -1.9
1,298,373 - 0.5
1,298,562 - 0.3
1,299,004 - 8914 mRNA_546 0.32 -0.5
1,299,005 + 8914 mRNA_546 0.32 -0.4
1,299,125 + 8914 mRNA_546 0.44 -1.4
1,299,132 - 8914 mRNA_546 0.44 0.2
1,299,560 + 8914 mRNA_546 0.84 0.0
1,299,683 - -0.8
1,299,691 - 0.1
1,299,858 + 0.2
1,299,859 - -0.1
1,299,873 - 1.2
1,299,873 - 1.0
1,299,877 + 0.7
1,299,896 + -0.4
1,299,912 + -0.8
1,299,912 - 0.4
1,299,918 + 0.3
1,299,942 - -0.1
1,299,949 - 1.3
1,299,949 - -0.1
1,299,950 + -0.4
1,299,951 - 0.3
1,300,068 - -0.6
1,300,241 + 2.1
1,300,358 - 1.5
1,300,527 + 8915 mRNA_547 0.14 2.6