Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_260

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_259: 8627 - HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356, at 622490 to 625658 8627 mRNA_260: 8628 - KOG2534 DNA polymerase IV (family X), at 625910 to 627593 8628 mRNA_261: 8629 - KOG1745 Histones H3 and H4, at 627613 to 628433 8629

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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625,752 + -0.3
625,771 - -0.1
625,779 - -0.6
625,784 - 0.1
625,785 + 0.4
625,826 - -0.2
625,835 - 0.7
625,835 + -0.4
625,842 - -0.5
625,847 - -0.1
625,847 + -0.2
625,851 - -0.8
625,858 - 0.6
625,858 - -0.3
625,884 + 0.2
626,007 - 0.4
626,579 + 8628 mRNA_260 0.40 0.2
626,704 + 8628 mRNA_260 0.47 1.9
626,748 - 8628 mRNA_260 0.50 2.1
626,888 - 8628 mRNA_260 0.58 -0.4
627,058 + 8628 mRNA_260 0.68 -1.1
627,061 + 8628 mRNA_260 0.68 -1.6
627,208 + 8628 mRNA_260 0.77 2.5
627,215 - 8628 mRNA_260 0.77 0.5
627,500 + 1.7
627,547 + -0.2
627,596 - -0.4
627,680 - 0.2
627,924 + 8629 mRNA_261 0.38 0.7
628,067 + 8629 mRNA_261 0.55 -0.1
628,194 - 8629 mRNA_261 0.71 0.5
628,201 + 8629 mRNA_261 0.72 0.0
628,357 - 0.6