Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_221

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_220: 8588 - K11159 K11159 carotenoid cleavage dioxygenase, at 542754 to 544832 8588 mRNA_221: 8589 - HMMPfam-Squalene/phytoene synthase-PF00494,ProSitePatterns-Squalene and phytoene synthases signature 2.-PS01045,SUPERFAMILY--SSF48576,TIGRFAM-CarR_dom_SF lycopene cyclase domain-TIGR03462, at 545315 to 547571 8589 mRNA_222: 8590 - K12795 SUGT1, SGT1 suppressor of G2 allele of SKP1, at 547787 to 548767 8590

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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544,585 - 8588 mRNA_220 0.88 0.5
544,586 + 8588 mRNA_220 0.88 -0.9
544,624 - 8588 mRNA_220 0.90 1.5
544,746 - -0.9
545,045 - -0.0
545,046 - -0.2
545,060 - -0.1
545,071 - -2.0
545,079 + -0.9
545,081 + -0.2
545,082 - -0.6
545,106 + 0.3
545,134 - 0.7
545,182 - -0.1
545,225 - -0.6
545,225 + -1.1
545,231 - -0.8
545,240 + -0.6
545,257 + 0.3
545,380 - 0.1
545,381 + 0.3
545,668 + 8589 mRNA_221 0.16 0.9
545,969 + 8589 mRNA_221 0.29 0.1
546,125 - 8589 mRNA_221 0.36 0.5
546,128 - 8589 mRNA_221 0.36 -1.3
546,133 - 8589 mRNA_221 0.36 0.1
546,141 + 8589 mRNA_221 0.37 -0.7
546,421 - 8589 mRNA_221 0.49 -0.5
546,716 + 8589 mRNA_221 0.62 0.3
546,729 + 8589 mRNA_221 0.63 0.9
546,849 - 8589 mRNA_221 0.68 -0.3
547,318 - 8589 mRNA_221 0.89 0.3
547,503 + -1.0
547,649 - -2.5